View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2947_low_3 (Length: 459)
Name: NF2947_low_3
Description: NF2947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2947_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 4 - 444
Target Start/End: Complemental strand, 48812613 - 48812172
Alignment:
| Q |
4 |
gagtgagatgaagaagtagtactagaaactgatcgaggtaaagaaagaagaattagaagagatactttcaggtgagtgttgtgtgtggttgcaagactcg |
103 |
Q |
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|||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48812613 |
gagtgaaatcaagaagcagtactagaaactgatcgaggtaaagaaagaagaattagaagagatactttcaggtgagtgttgtgtgtggttgcaagactcg |
48812514 |
T |
|
| Q |
104 |
tgtgacattcataaccacacaaaatattgttgattcttttaccttaaaatgaaaatttggacacttaatccattacacgcaacatggatgaattctcgtt |
203 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
48812513 |
tgtgacattcataaccacacaaaatattgctgattcttttaccttaaaatgaaaatttggacacataatccattacacgcaacatggatgaattctcgtt |
48812414 |
T |
|
| Q |
204 |
aactattgtcgtttcatagtgtctatatgagactaaacacaaccataacaaaaccaacgtggtccacttttgtcnnnnnnnc-aaacactaatgtggtcc |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
48812413 |
aactattgtcgtttcatagtgtctatatgagactaaacacaaccataacaaaaccaacgtggtccacttttgtcaaaaaaacaaaacactaatgtggtcc |
48812314 |
T |
|
| Q |
303 |
actgttactaataaaaggtttaacgtaaagaattgaaatgctaggaagaatcgatttaaaaagtgtggaactcgtctgagttttaaataagagagtggat |
402 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48812313 |
actgttactaataaaaggtttaacgtaaagaattgaaatgctaggaagaatcgatttaaaaagtgtggaactcgtctgagttttaaataagagagtggat |
48812214 |
T |
|
| Q |
403 |
ttaaaaaggagtgctcataacgctaatcttgatgtaaaatgt |
444 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||| |
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| T |
48812213 |
ttaaaaaggagtgctcataacgctactcttgatgtaaaatgt |
48812172 |
T |
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