View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2947_low_4 (Length: 457)
Name: NF2947_low_4
Description: NF2947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF2947_low_4 |
| |
|
Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-150; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 166 - 439
Target Start/End: Original strand, 19395695 - 19395968
Alignment:
Q |
166 |
tataacattgaaatccaatgataacatacagatatataaacttataaaggctatatacgttaatcatatacctctttcaagtcagatttctccactgcca |
265 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
T |
19395695 |
tataacattgaaatccaatgataacatacagatatataaacttataaaggctatatacgttaatcatatacctctttcaagtcagatttctccactacca |
19395794 |
T |
|
Q |
266 |
ctaagcttagaaaatgctgacatttcataaatctaatgcttcatttccaaccaactttagtttctttaaatcaatcatataacctttatatttacatgac |
365 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
19395795 |
ctaagcttagaaaatgctgacatttcataaatctaatgcttcatttccaaccaactttagtttctttaaatcaatcatataacctttatatttacatgac |
19395894 |
T |
|
Q |
366 |
ctgtttgtcatccatttcattagcatcttcaattattggaaatctatttctcctcctatctctagttgacatct |
439 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
19395895 |
ctgtttgtcatccatttcattagcatcttcaattattggaaatctatttctcctcctatctctagttgacatct |
19395968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 16 - 137
Target Start/End: Original strand, 19390094 - 19390218
Alignment:
Q |
16 |
atggtcccaatggatgatgccgatacaataatgagtaggagcaaagtcatcggcaacaactctaatagt---tctaagtagacagaatcagtaagaggaa |
112 |
Q |
|
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
|
|
T |
19390094 |
atggtcccaatggatgatgccgatgcaataatgagtaggagcaaagtcatcggcaacaactctaatagtttctctaagtagtcagaatcagtaagaggaa |
19390193 |
T |
|
Q |
113 |
caagcttcaccctaaatcattttta |
137 |
Q |
|
|
|||||||||||||||||||| |||| |
|
|
T |
19390194 |
caagcttcaccctaaatcatcttta |
19390218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 132 - 166
Target Start/End: Original strand, 19391297 - 19391331
Alignment:
Q |
132 |
tttttactaaattgagggttcacaaaaacttccat |
166 |
Q |
|
|
||||||||||||||||||||||||||||||||||| |
|
|
T |
19391297 |
tttttactaaattgagggttcacaaaaacttccat |
19391331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 14894 times since January 2019
Visitors: 8422