View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2947_low_7 (Length: 250)

Name: NF2947_low_7
Description: NF2947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2947_low_7
NF2947_low_7
[»] chr4 (17 HSPs)
chr4 (13-223)||(27269952-27270162)
chr4 (16-236)||(21204831-21205050)
chr4 (9-214)||(30972343-30972548)
chr4 (77-191)||(48336967-48337081)
chr4 (99-197)||(29521661-29521759)
chr4 (9-206)||(37772851-37773048)
chr4 (72-210)||(8830898-8831036)
chr4 (102-189)||(53650413-53650500)
chr4 (72-162)||(22653289-22653379)
chr4 (13-163)||(25130447-25130597)
chr4 (104-169)||(9831418-9831483)
chr4 (78-162)||(5727131-5727215)
chr4 (102-197)||(29969876-29969971)
chr4 (104-170)||(42527341-42527407)
chr4 (78-151)||(5760994-5761067)
chr4 (9-46)||(9831323-9831360)
chr4 (72-169)||(20510395-20510492)
[»] chr3 (6 HSPs)
chr3 (13-181)||(25845591-25845759)
chr3 (103-197)||(25408797-25408891)
chr3 (102-187)||(36803190-36803275)
chr3 (104-160)||(47161022-47161078)
chr3 (78-151)||(18650901-18650974)
chr3 (78-151)||(18690326-18690399)
[»] chr1 (9 HSPs)
chr1 (72-197)||(44675097-44675222)
chr1 (103-197)||(9484878-9484972)
chr1 (99-206)||(31069674-31069780)
chr1 (72-197)||(4889452-4889577)
chr1 (104-166)||(26260785-26260847)
chr1 (99-197)||(52626535-52626633)
chr1 (67-197)||(34703454-34703584)
chr1 (127-196)||(36098593-36098662)
chr1 (143-193)||(10686161-10686211)
[»] chr8 (8 HSPs)
chr8 (20-207)||(8462475-8462661)
chr8 (72-162)||(39435461-39435550)
chr8 (97-183)||(16840328-16840416)
chr8 (104-169)||(37929141-37929206)
chr8 (99-154)||(21523889-21523944)
chr8 (75-169)||(5048491-5048585)
chr8 (104-169)||(33191203-33191268)
chr8 (78-163)||(33282823-33282908)
[»] scaffold0204 (1 HSPs)
scaffold0204 (77-191)||(24489-24603)
[»] chr6 (9 HSPs)
chr6 (72-197)||(22469424-22469549)
chr6 (72-197)||(9907160-9907285)
chr6 (8-222)||(14215967-14216181)
chr6 (69-197)||(34714914-34715042)
chr6 (104-163)||(11324501-11324560)
chr6 (99-163)||(17292772-17292836)
chr6 (104-197)||(2682796-2682889)
chr6 (104-197)||(7155453-7155546)
chr6 (103-197)||(12688220-12688314)
[»] chr2 (13 HSPs)
chr2 (13-204)||(35590166-35590357)
chr2 (107-197)||(30505752-30505842)
chr2 (69-197)||(27009197-27009325)
chr2 (72-197)||(36176614-36176738)
chr2 (98-166)||(45131129-45131197)
chr2 (67-197)||(37738057-37738188)
chr2 (67-197)||(9840763-9840893)
chr2 (104-197)||(33645808-33645901)
chr2 (67-203)||(31640236-31640372)
chr2 (101-163)||(38409018-38409080)
chr2 (12-115)||(37120943-37121046)
chr2 (67-197)||(27708158-27708288)
chr2 (66-162)||(44735982-44736078)
[»] scaffold0047 (1 HSPs)
scaffold0047 (13-183)||(64273-64443)
[»] chr7 (10 HSPs)
chr7 (73-209)||(40347982-40348118)
chr7 (13-197)||(34237097-34237281)
chr7 (72-162)||(17116410-17116500)
chr7 (55-204)||(27076557-27076707)
chr7 (55-204)||(27201594-27201744)
chr7 (102-155)||(26569739-26569792)
chr7 (104-193)||(49035377-49035466)
chr7 (99-166)||(12092705-12092772)
chr7 (8-36)||(4998075-4998103)
chr7 (102-190)||(42017819-42017907)
[»] chr5 (11 HSPs)
chr5 (99-225)||(39839933-39840059)
chr5 (72-197)||(19314975-19315100)
chr5 (99-163)||(26778725-26778789)
chr5 (72-193)||(12831489-12831610)
chr5 (72-193)||(12863464-12863585)
chr5 (102-166)||(18967885-18967949)
chr5 (104-155)||(29994652-29994703)
chr5 (127-193)||(27482647-27482713)
chr5 (104-193)||(16610602-16610691)
chr5 (98-206)||(11305849-11305955)
chr5 (129-169)||(25942615-25942655)


Alignment Details
Target: chr4 (Bit Score: 159; Significance: 9e-85; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 13 - 223
Target Start/End: Complemental strand, 27270162 - 27269952
Alignment:
Q  13 aaatctggaaagaaagaaataacatgctctttaaaggcactcaatgttcaattgttcacgtggttgataaaattaagccactcattttcatgtggttgaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| || ||| |||||||||||||||    
T  27270162 aaatctggaaagaaagaaataacatgctctttaaaggcactcaatgaccaattgttcacgtggttgataaaattaagtcaatcactttcatgtggttgaa 27270063  T
Q  113 ggcgaaatttccttcacttccgttcaattatcatggttggtggtttagtccattcacaattttgagcatagactaatagttatttgctttctttagttac 212  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||  ||||  |||||||||||||| ||||||||||||     
T  27270062 ggcgaaatttccttcacttcccttcaattatcatggttggtggcttagtccattcacaattttggacatatgctaatagttatttgttttctttagttaa 27269963  T
Q  213 tgctttttgtt 223  Q
    |||||||||||    
T  27269962 tgctttttgtt 27269952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 21205050 - 21204831
Alignment:
Q  16 tctggaaagaaagaaataacatgctctttaaaggcactcaatgttcaattgttcacgtggttgataaaattaagccactcattttcatgtggttgaaggc 115  Q
    |||||||| ||| |||||||| |||||||||| ||||||||||   |||| ||||  ||||||||||||||||| || ||| ||||||||||||||| ||    
T  21205050 tctggaaataaataaataacaggctctttaaaagcactcaatgactaatt-ttcagatggttgataaaattaagtcaatcactttcatgtggttgaatgc 21204952  T
Q  116 gaaatttccttcacttccgttcaattatcatggttggtggtttagtccattcacaattttgagcatagactaatagttatttgctttctttagttactgc 215  Q
    ||||||| |||||||||| ||||||||||||||||||||| ||||| ||||||||||||||  ||||| |||||||||||||| |||||||||||| |||    
T  21204951 gaaattttcttcacttcccttcaattatcatggttggtggcttagttcattcacaattttggacataggctaatagttatttgttttctttagttaatgc 21204852  T
Q  216 tttttgtttttactgtaaata 236  Q
    |||||||| ||||||||||||    
T  21204851 tttttgttgttactgtaaata 21204831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 9 - 214
Target Start/End: Complemental strand, 30972548 - 30972343
Alignment:
Q  9 tggaaaatctggaaagaaagaaataacatgctctttaaaggcactcaatgttcaattgttcacgtggttgataaaattaagccactcattttcatgtggt 108  Q
    |||||||| ||||||||||||||||||||||||||||| ||||   | || |||||| | || |||||||||||||||||| | || | ||||||||||     
T  30972548 tggaaaatttggaaagaaagaaataacatgctctttaatggcaaagagtgctcaattatgcaggtggttgataaaattaagtcgctgactttcatgtggc 30972449  T
Q  109 tgaaggcgaaatttccttcacttccgttcaattatcatggttggtggtttagtccattcacaattttgagcatagactaatagttatttgctttctttag 208  Q
    ||||||||||||||||||| ||||| ||||| |||||||| |||||| ||||||  ||||| |||||  |||||| ||||||||||||||||||||||||    
T  30972448 tgaaggcgaaatttccttctcttcccttcaactatcatggctggtggcttagtcatttcactatttttggcataggctaatagttatttgctttctttag 30972349  T
Q  209 ttactg 214  Q
    | ||||    
T  30972348 tcactg 30972343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 77 - 191
Target Start/End: Original strand, 48336967 - 48337081
Alignment:
Q  77 tgataaaattaagccactcattttcatgtggttgaaggcgaaatttccttcacttccgttcaattatcatggttggtggtttagtccattcacaattttg 176  Q
    ||||||||||||| | || | |||||||||||||||||||||||||||||| ||||| |||||| ||||| |||||||||||||| ||||||| || ||     
T  48336967 tgataaaattaagtcgctaactttcatgtggttgaaggcgaaatttccttctcttcccttcaatcatcatagttggtggtttagttcattcactatatta 48337066  T
Q  177 agcatagactaatag 191  Q
     |||||| |||||||    
T  48337067 ggcataggctaatag 48337081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 99 - 197
Target Start/End: Complemental strand, 29521759 - 29521661
Alignment:
Q  99 ttcatgtggttgaaggcgaaatttccttcacttccgttcaattatcatggttggtggtttagtccattcacaattttgagcatagactaatagttattt 197  Q
    |||||||||||||||||||||| | |||| ||||| ||||||||||||| ||||||||||| ||| |||||||| ||| |||| ||||| |||||||||    
T  29521759 ttcatgtggttgaaggcgaaatgtgcttctcttcctttcaattatcatgattggtggtttaatccgttcacaatgttgggcattgactagtagttattt 29521661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 9 - 206
Target Start/End: Original strand, 37772851 - 37773048
Alignment:
Q  9 tggaaaatctggaaagaaagaaataacatgctctttaaaggcactcaatgttcaattgttcacgtggttgataaaattaagccactcattttcatgtggt 108  Q
    |||||||| || ||| ||| ||||||||   |||| |||||||   ||||| || |||||||  |||||||||| |||||| | |||| |||| | ||||    
T  37772851 tggaaaatttgaaaataaacaaataacagaatcttcaaaggcaaataatgtacagttgttcagatggttgataacattaagtcgctcactttcttatggt 37772950  T
Q  109 tgaaggcgaaatttccttcacttccgttcaattatcatggttggtggtttagtccattcacaattttgagcatagactaatagttatttgctttcttt 206  Q
    ||||   |||||||||||| ||||| |||||||| |||||||||||| ||||||| ||||| |||||| |||| |  |||| ||||||||| ||||||    
T  37772951 tgaaaaagaaatttccttctcttcccttcaattaccatggttggtggcttagtcctttcaccattttgggcattggttaattgttatttgcattcttt 37773048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 210
Target Start/End: Complemental strand, 8831036 - 8830898
Alignment:
Q  72 gtggttgataaaattaagccactcattttcatgtggttgaaggcgaaatttccttcacttccgttcaattatcatggttggtggtttagtccattcacaa 171  Q
    |||||||| ||||||||| | |||| ||| |||| |||||||| |||||||| ||  ||||| |||||||| ||||  |||||| ||| ||| ||||| |    
T  8831036 gtggttgacaaaattaagtcgctcacttttatgtagttgaaggagaaatttctttatcttcccttcaattaccatgactggtggcttattcctttcacca 8830937  T
Q  172 ttttgagcatagactaatagttatttgctttctttagtt 210  Q
     ||||||||| |  |||| |||||||| |||||||||||    
T  8830936 atttgagcatcggttaatcgttatttgttttctttagtt 8830898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 189
Target Start/End: Complemental strand, 53650500 - 53650413
Alignment:
Q  102 atgtggttgaaggcgaaatttccttcacttccgttcaattatcatggttggtggtttagtccattcacaattttgagcatagactaat 189  Q
    ||||||||||||||||| ||| || | ||||| |||||||| |||| ||| ||| |||||||||||||||| |||  ||| |||||||    
T  53650500 atgtggttgaaggcgaagtttactacccttcctttcaattaccatgcttgatggcttagtccattcacaatgttggacattgactaat 53650413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 72 - 162
Target Start/End: Original strand, 22653289 - 22653379
Alignment:
Q  72 gtggttgataaaattaagccactcattttcatgtggttgaaggcgaaatttccttcacttccgttcaattatcatggttggtggtttagtc 162  Q
    ||||||||||| |||||  | ||||  || ||||||||||||||||||||| |||   || | ||||||||||||||||||||| ||||||    
T  22653289 gtggttgataagattaaatcgctcacatttatgtggttgaaggcgaaatttgcttacattaccttcaattatcatggttggtggcttagtc 22653379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 163
Target Start/End: Complemental strand, 25130597 - 25130447
Alignment:
Q  13 aaatctggaaagaaagaaataacatgctctttaaaggcactcaatgttcaattgttcacgtggttgataaaattaagccactcattttcatgtggttgaa 112  Q
    |||| ||||||||||| || |||| | | ||||| || ||  |||| |||||||| || ||||| ||||| || ||| | |||  |||||||||||||||    
T  25130597 aaatatggaaagaaaggaacaacaagttgtttaagggaacaaaatgctcaattgtgcaagtggtcgataagatcaagtccctcgctttcatgtggttgaa 25130498  T
Q  113 ggcgaaatttccttcacttccgttcaattatcatggttggtggtttagtcc 163  Q
    || ||||||| || | ||| |  |||| ||||||||||||||| |||||||    
T  25130497 ggagaaatttgctactctttccctcaactatcatggttggtggcttagtcc 25130447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 169
Target Start/End: Original strand, 9831418 - 9831483
Alignment:
Q  104 gtggttgaaggcgaaatttccttcacttccgttcaattatcatggttggtggtttagtccattcac 169  Q
    ||||||||||||||||||   | ||||||| |||||||||||||| |||||| ||||||| |||||    
T  9831418 gtggttgaaggcgaaattcgttacacttcccttcaattatcatggctggtggcttagtccgttcac 9831483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 162
Target Start/End: Original strand, 5727131 - 5727215
Alignment:
Q  78 gataaaattaagccactcattttcatgtggttgaaggcgaaatttccttcacttccgttcaattatcatggttggtggtttagtc 162  Q
    |||||||||||||| || |  ||||||||||||||||  |||||| |||| || ||  |||||||||||||||| ||| ||||||    
T  5727131 gataaaattaagccgcttacattcatgtggttgaagggaaaatttgcttctctccctctcaattatcatggttgatggcttagtc 5727215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 197
Target Start/End: Original strand, 29969876 - 29969971
Alignment:
Q  102 atgtggttgaaggcgaaatttccttcacttccgttcaattatcatggttggtggtttagtccattcacaattttgagcatagactaatagttattt 197  Q
    ||||||||||||||||||||| || | ||||| ||| | | | ||||||||||| ||||||| ||||| ||  |   |||||||||||||||||||    
T  29969876 atgtggttgaaggcgaaatttactactcttcccttctacttttatggttggtggcttagtccgttcaccatgatagacatagactaatagttattt 29969971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 170
Target Start/End: Complemental strand, 42527407 - 42527341
Alignment:
Q  104 gtggttgaaggcgaaatttccttcacttccgttcaattatcatggttggtggtttagtccattcaca 170  Q
    ||||||||||| ||||||| || | ||||| | ||||||||||||||||||| ||| ||| ||||||    
T  42527407 gtggttgaaggtgaaattttctactcttccttccaattatcatggttggtggcttaatccgttcaca 42527341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 151
Target Start/End: Original strand, 5760994 - 5761067
Alignment:
Q  78 gataaaattaagccactcattttcatgtggttgaaggcgaaatttccttcacttccgttcaattatcatggttg 151  Q
    |||||||||||||| || |  ||||||||||||||||  |||||| |||| || ||  ||||||||||||||||    
T  5760994 gataaaattaagccgcttacattcatgtggttgaagggaaaatttgcttctctccctctcaattatcatggttg 5761067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 9831323 - 9831360
Alignment:
Q  9 tggaaaatctggaaagaaagaaataacatgctctttaa 46  Q
    |||||||| ||||||||||||||||||||||| |||||    
T  9831323 tggaaaatttggaaagaaagaaataacatgctgtttaa 9831360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 169
Target Start/End: Original strand, 20510395 - 20510492
Alignment:
Q  72 gtggttgataaaattaagccactcattttcatgtggttgaaggcgaaatttccttcacttccgttcaattatcatggttggtggtttagtccattcac 169  Q
    ||||||||||| |||||| |  ||  ||| ||||||||||||| |||||||    | ||||| ||||||| ||||||||||||| ||||||| |||||    
T  20510395 gtggttgataagattaagtccatctcttttatgtggttgaaggtgaaatttaacacgcttcccttcaattttcatggttggtggcttagtccgttcac 20510492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 5e-31; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 13 - 181
Target Start/End: Original strand, 25845591 - 25845759
Alignment:
Q  13 aaatctggaaagaaagaaataacatgctctttaaaggcactcaatgttcaattgttcacgtggttgataaaattaagccactcattttcatgtggttgaa 112  Q
    |||| |||||||||||||| |||||  | ||||||||||   | |||||||||||||| |||||||||||||||||| | |||  |||||||||||||||    
T  25845591 aaatttggaaagaaagaaacaacatattatttaaaggcaaagattgttcaattgttcaggtggttgataaaattaagtcgctctctttcatgtggttgaa 25845690  T
Q  113 ggcgaaatttccttcacttccgttcaattatcatggttggtggtttagtccattcacaattttgagcat 181  Q
    |||||| |||||||| || || || || || |||||||||||| ||||||||| ||| |||||| ||||    
T  25845691 ggcgaagtttccttctctgcccttgaactaccatggttggtggcttagtccatacaccattttgggcat 25845759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 103 - 197
Target Start/End: Original strand, 25408797 - 25408891
Alignment:
Q  103 tgtggttgaaggcgaaatttccttcacttccgttcaattatcatggttggtggtttagtccattcacaattttgagcatagactaatagttattt 197  Q
    |||||||||||||||||||  ||||| || | ||||||||||||||||||||| |||||||||| || || ||| | |||| ||||| |||||||    
T  25408797 tgtggttgaaggcgaaattcacttcaatttccttcaattatcatggttggtggcttagtccatttaccatgttgggtataggctaattgttattt 25408891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 187
Target Start/End: Original strand, 36803190 - 36803275
Alignment:
Q  102 atgtggttgaaggcgaaatttccttcacttccgttcaattatcatggttggtggtttagtccattcacaattttgagcatagacta 187  Q
    ||||||||||||||||| ||| |  |  |||| ||||||| ||||| ||||||| ||||||| |||||||| |||||||| |||||    
T  36803190 atgtggttgaaggcgaagtttaccactattcctttcaattttcatgcttggtggcttagtccgttcacaatgttgagcattgacta 36803275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 160
Target Start/End: Original strand, 47161022 - 47161078
Alignment:
Q  104 gtggttgaaggcgaaatttccttcacttccgttcaattatcatggttggtggtttag 160  Q
    ||||||||||| ||| |||||||| ||||| |||||||| |||||||||||| ||||    
T  47161022 gtggttgaaggtgaagtttccttctcttccattcaattaccatggttggtggcttag 47161078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 151
Target Start/End: Original strand, 18650901 - 18650974
Alignment:
Q  78 gataaaattaagccactcattttcatgtggttgaaggcgaaatttccttcacttccgttcaattatcatggttg 151  Q
    |||||||||||||| || |  ||||||||||||||||  |||||| |||| || ||  ||||||||||||||||    
T  18650901 gataaaattaagccgcttacattcatgtggttgaagggaaaatttgcttctctccctctcaattatcatggttg 18650974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 151
Target Start/End: Original strand, 18690326 - 18690399
Alignment:
Q  78 gataaaattaagccactcattttcatgtggttgaaggcgaaatttccttcacttccgttcaattatcatggttg 151  Q
    |||||||||||||| || |  ||||||||||||||||  |||||| |||| || ||  ||||||||||||||||    
T  18690326 gataaaattaagccgcttacattcatgtggttgaagggaaaatttgcttctctccctctcaattatcatggttg 18690399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 72 - 197
Target Start/End: Original strand, 44675097 - 44675222
Alignment:
Q  72 gtggttgataaaattaagccactcattttcatgtggttgaaggcgaaatttccttcacttccgttcaattatcatggttggtggtttagtccattcacaa 171  Q
    ||||||||||| |||||||||||    |||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||| ||||||| || |  |    
T  44675097 gtggttgataagattaagccacttgcattcatgtggttgaaggcgaaatttgcttcccttcccttcaattatcatggttggtggcttagtccgtttatca 44675196  T
Q  172 ttttgagcatagactaatagttattt 197  Q
    | ||| ||||||||||||||||||||    
T  44675197 tgttgggcatagactaatagttattt 44675222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 103 - 197
Target Start/End: Original strand, 9484878 - 9484972
Alignment:
Q  103 tgtggttgaaggcgaaatttccttcacttccgttcaattatcatggttggtggtttagtccattcacaattttgagcatagactaatagttattt 197  Q
    ||||||||||||||||||||  ||| ||||| ||||||||||||||||||||||||||||  |||||||| ||| |||| ||||| | |||||||    
T  9484878 tgtggttgaaggcgaaatttgtttctcttcccttcaattatcatggttggtggtttagtcagttcacaatgttgggcatcgactagttgttattt 9484972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 99 - 206
Target Start/End: Original strand, 31069674 - 31069780
Alignment:
Q  99 ttcatgtggttgaaggcgaaatttccttcacttccgttcaattatcatggttggtggtttagtccattcacaattttgagcatagactaatagttatttg 198  Q
    |||||||||||||||||||||||| | || ||||| || ||||||||||| |||| ||||| ||| || || || |||||||| ||||| |||||||||     
T  31069674 ttcatgtggttgaaggcgaaatttgcctctcttccattaaattatcatggatggtagtttaatccgtttactatgttgagcattgactagtagttattt- 31069772  T
Q  199 ctttcttt 206  Q
    ||||||||    
T  31069773 ctttcttt 31069780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 72 - 197
Target Start/End: Original strand, 4889452 - 4889577
Alignment:
Q  72 gtggttgataaaattaagccactcattttcatgtggttgaaggcgaaatttccttcacttccgttcaattatcatggttggtggtttagtccattcacaa 171  Q
    |||||||||||||||||| | ||    ||||||||||| |||||||| || ||||| ||||| || || |||||||| |||||  ||||||||||||| |    
T  4889452 gtggttgataaaattaagtcgcttgcattcatgtggttcaaggcgaagttcccttctcttccctttaactatcatgggtggtgacttagtccattcacta 4889551  T
Q  172 ttttgagcatagactaatagttattt 197  Q
    |||||  ||||| |||| ||||||||    
T  4889552 ttttggacataggctaaaagttattt 4889577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 104 - 166
Target Start/End: Original strand, 26260785 - 26260847
Alignment:
Q  104 gtggttgaaggcgaaatttccttcacttccgttcaattatcatggttggtggtttagtccatt 166  Q
    ||||||||||||||| ||| |||| ||||| |||||||||||||| |||||| ||||||||||    
T  26260785 gtggttgaaggcgaagtttgcttctcttcccttcaattatcatgggtggtggcttagtccatt 26260847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 99 - 197
Target Start/End: Original strand, 52626535 - 52626633
Alignment:
Q  99 ttcatgtggttgaaggcgaaatttccttcacttccgttcaattatcatggttggtggtttagtccattcacaattttgagcatagactaatagttattt 197  Q
    |||||||||||| |||| |||||   ||| ||||| ||||||||||||||||||||| |||||||||| || || ||| | |||| ||||| |||||||    
T  52626535 ttcatgtggttggaggcaaaattcgtttctcttcccttcaattatcatggttggtggcttagtccatttaccatattgcgtataggctaattgttattt 52626633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 67 - 197
Target Start/End: Complemental strand, 34703584 - 34703454
Alignment:
Q  67 ttcacgtggttgataaaattaagccactcattttcatgtggttgaaggcgaaatttccttcacttccgttcaattatcatggttggtggtttagtccatt 166  Q
    |||| ||||||||||| |||||| | |||| ||| ||||||||||||||||||| | |  | ||||| || || | ||||||||||||| | ||| | ||    
T  34703584 ttcaggtggttgataagattaagtccctcacttttatgtggttgaaggcgaaatatgcaactcttccctttaactttcatggttggtggctaagttcgtt 34703485  T
Q  167 cacaattttgagcatagactaatagttattt 197  Q
    ||| || |||  ||||| |||||||||||||    
T  34703484 caccatgttggacataggctaatagttattt 34703454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 196
Target Start/End: Complemental strand, 36098662 - 36098593
Alignment:
Q  127 cacttccgttcaattatcatggttggtggtttagtccattcacaattttgagcatagactaatagttatt 196  Q
    ||||||| |||||||||||||| |||||| ||||||| ||||| || ||| |||||| |||| |||||||    
T  36098662 cacttcccttcaattatcatggctggtggcttagtccgttcaccatgttgggcataggctaagagttatt 36098593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 193
Target Start/End: Complemental strand, 10686211 - 10686161
Alignment:
Q  143 tcatggttggtggtttagtccattcacaattttgagcatagactaatagtt 193  Q
    |||||||||||||||| |||| |||||||| ||| |||||| |||||||||    
T  10686211 tcatggttggtggttttgtccgttcacaatgttgggcataggctaatagtt 10686161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 20 - 207
Target Start/End: Complemental strand, 8462661 - 8462475
Alignment:
Q  20 gaaagaaagaaataacatgctctttaaaggcactcaatgttcaattgttcacgtggttgataaaattaagccactcattttcatgtggttgaaggcgaaa 119  Q
    ||||||||||||||||| | | || |||||||   |||||||  |||| || ||||||||||| |||||| ||||||  |||||||||||||||||||||    
T  8462661 gaaagaaagaaataaca-gatattcaaaggcaaagaatgttcggttgtgcaggtggttgataagattaagtcactcacattcatgtggttgaaggcgaaa 8462563  T
Q  120 tttccttcacttccgttcaattatcatggttggtggtttagtccattcacaattttgagcatagactaatagttatttgctttcttta 207  Q
    ||| |||| ||||| ||||||||||||||||||||| ||||||  || || ||  ||| ||||| ||||| |||||||  ||||||||    
T  8462562 tttgcttctcttcccttcaattatcatggttggtggcttagtctgtttaccatgatgaacataggctaattgttatttcttttcttta 8462475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 72 - 162
Target Start/End: Complemental strand, 39435550 - 39435461
Alignment:
Q  72 gtggttgataaaattaagccactcattttcatgtggttgaaggcgaaatttccttcacttccgttcaattatcatggttggtggtttagtc 162  Q
    ||||||||||| |||||| |||||   |||||||||||||||||||||||| |||| ||||| ||| ||||||||||||||||||| ||||    
T  39435550 gtggttgataagattaagtcactcgagttcatgtggttgaaggcgaaatttgcttctcttcctttc-attatcatggttggtggttgagtc 39435461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 183
Target Start/End: Original strand, 16840328 - 16840416
Alignment:
Q  97 ttttcatgtggttgaaggcgaaatttccttcacttccgttcaat--tatcatggttggtggtttagtccattcacaattttgagcatag 183  Q
    |||||||||||||||||| |||||   |||| ||||| ||||||  ||||||| ||||||| |||| |||||||| |||||| ||||||    
T  16840328 ttttcatgtggttgaaggagaaatactcttctcttcccttcaattatatcatgcttggtggcttagcccattcaccattttgggcatag 16840416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 169
Target Start/End: Original strand, 37929141 - 37929206
Alignment:
Q  104 gtggttgaaggcgaaatttccttcacttccgttcaattatcatggttggtggtttagtccattcac 169  Q
    ||||||||||| |||||||||| | ||||| || || ||||||||||||||| ||||||| |||||    
T  37929141 gtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttcac 37929206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 154
Target Start/End: Original strand, 21523889 - 21523944
Alignment:
Q  99 ttcatgtggttgaaggcgaaatttccttcacttccgttcaattatcatggttggtg 154  Q
    |||||||||||||| ||||| ||||| || ||||| ||||| ||||||||||||||    
T  21523889 ttcatgtggttgaaagcgaagtttccatctcttcccttcaactatcatggttggtg 21523944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 169
Target Start/End: Original strand, 5048491 - 5048585
Alignment:
Q  75 gttgataaaattaagccactcattttcatgtggttgaaggcgaaatttccttcacttccgttcaattatcatggttggtggtttagtccattcac 169  Q
    |||||||| |||||||| |||  ||| ||||||||||||| ||||||   | | ||||| ||||| | ||||||||||||| ||||||| |||||    
T  5048491 gttgataagattaagcccctctcttttatgtggttgaaggtgaaattaaatacgcttcccttcaactttcatggttggtggcttagtccgttcac 5048585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 169
Target Start/End: Complemental strand, 33191268 - 33191203
Alignment:
Q  104 gtggttgaaggcgaaatttccttcacttccgttcaattatcatggttggtggtttagtccattcac 169  Q
    ||||||||||  |||||||  | | ||||| ||||||||||||||||||||| ||||||| |||||    
T  33191268 gtggttgaagttgaaatttgatactcttcccttcaattatcatggttggtggcttagtccgttcac 33191203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 163
Target Start/End: Original strand, 33282823 - 33282908
Alignment:
Q  78 gataaaattaagccactcattttcatgtggttgaaggcgaaatttccttcacttccgttcaattatcatggttggtggtttagtcc 163  Q
    |||||||||||| | || | ||| | |||||||||||  |||||| |||| || ||  |||||||||||||||||||| |||||||    
T  33282823 gataaaattaagtcgcttacttttaggtggttgaaggaaaaatttgcttctctccctctcaattatcatggttggtggcttagtcc 33282908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 77 - 191
Target Start/End: Original strand, 24489 - 24603
Alignment:
Q  77 tgataaaattaagccactcattttcatgtggttgaaggcgaaatttccttcacttccgttcaattatcatggttggtggtttagtccattcacaattttg 176  Q
    ||||||||||||| | || | |||||||||||||||||||||||||||||| ||||| |||||| ||||| |||||||||||||| ||||||| || ||     
T  24489 tgataaaattaagtcgctaactttcatgtggttgaaggcgaaatttccttctcttcccttcaatcatcatagttggtggtttagttcattcactatatta 24588  T
Q  177 agcatagactaatag 191  Q
     |||||| |||||||    
T  24589 ggcataggctaatag 24603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 72 - 197
Target Start/End: Original strand, 22469424 - 22469549
Alignment:
Q  72 gtggttgataaaattaagccactcattttcatgtggttgaaggcgaaatttccttcacttccgttcaattatcatggttggtggtttagtccattcacaa 171  Q
    ||||| |||||||||||| | |||  |||||||||||||||||  ||||  ||||| ||||| ||||||||||||| ||||||| ||||||||||||| |    
T  22469424 gtggtagataaaattaagtcgctcgctttcatgtggttgaaggataaatacccttctcttcccttcaattatcatgcttggtggcttagtccattcacca 22469523  T
Q  172 ttttgagcatagactaatagttattt 197  Q
    ||||||||||||  |||| |||||||    
T  22469524 ttttgagcataggttaattgttattt 22469549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 72 - 197
Target Start/End: Original strand, 9907160 - 9907285
Alignment:
Q  72 gtggttgataaaattaagccactcattttcatgtggttgaaggcgaaatttccttcacttccgttcaattatcatggttggtggtttagtccattcacaa 171  Q
    ||||| |||||||||||| | |||  ||||||||||||||||| |||||  |||||  |||| |||||||||||||  |||||| ||| ||||||||| |    
T  9907160 gtggtagataaaattaagtcgctcgctttcatgtggttgaaggagaaatacccttctattcccttcaattatcatgcgtggtggcttaatccattcacca 9907259  T
Q  172 ttttgagcatagactaatagttattt 197  Q
    ||||  |||||| ||||| |||||||    
T  9907260 ttttaggcataggctaattgttattt 9907285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 222
Target Start/End: Complemental strand, 14216181 - 14215967
Alignment:
Q  8 atggaaaatctggaaagaaagaaataacatgctctttaaaggcactcaatgttcaattgttcacgtggttgataaaattaagccactcattttcatgtgg 107  Q
    |||| |||| ||||||||||| ||||| | | | ||||| ||||   |||| |||||||| || ||| |||||||| ||||| | || |  |||||||||    
T  14216181 atgggaaatatggaaagaaaggaataatagggtatttaatggcaaagaatgctcaattgtgcaggtgattgataaagttaagtcgctgacgttcatgtgg 14216082  T
Q  108 ttgaaggcgaaatttccttcacttccgttcaattatcatggttggtggtttagtccattcacaattttgagcatagactaatagttatttgctttcttta 207  Q
    ||||||  |||||||||||| ||||  ||| | |||||| |||||||| |||  || || || || ||| | |||| |||||||||||| ||||||||||    
T  14216081 ttgaagaagaaatttccttctcttctcttcgactatcatagttggtggcttaacccttttaccatgttgggaataggctaatagttattggctttcttta 14215982  T
Q  208 gttactgctttttgt 222  Q
     | |||| |||||||    
T  14215981 ctcactgttttttgt 14215967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 197
Target Start/End: Original strand, 34714914 - 34715042
Alignment:
Q  69 cacgtggttgataaaattaagccactcattttcatgtggttgaaggcgaaatttccttcacttccgttcaattatcatggttggtggtttagtccattca 168  Q
    |||||||||||||| |||||| | |||| ||| | ||||||||| || |||||| |||| |||||  ||||||| |||||||||||| ||||||  || |    
T  34714914 cacgtggttgataagattaagtctctcacttttaggtggttgaaagcaaaatttacttctcttcccatcaattaccatggttggtggcttagtctgttta 34715013  T
Q  169 caattttgagcatagactaatagttattt 197  Q
    | ||  ||  |||||||||||||||||||    
T  34715014 ccatactggacatagactaatagttattt 34715042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 104 - 163
Target Start/End: Original strand, 11324501 - 11324560
Alignment:
Q  104 gtggttgaaggcgaaatttccttcacttccgttcaattatcatggttggtggtttagtcc 163  Q
    ||||||||||||||||||| |||| ||||| |||||||||||||| |||||| |||||||    
T  11324501 gtggttgaaggcgaaatttgcttctcttcccttcaattatcatgggtggtggcttagtcc 11324560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 99 - 163
Target Start/End: Complemental strand, 17292836 - 17292772
Alignment:
Q  99 ttcatgtggttgaaggcgaaatttccttcacttccgttcaattatcatggttggtggtttagtcc 163  Q
    |||||||||||||| || |||||| |||| ||||| ||||||||||||||||| ||| |||||||    
T  17292836 ttcatgtggttgaacgccaaatttgcttctcttcccttcaattatcatggttgatggcttagtcc 17292772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 197
Target Start/End: Original strand, 2682796 - 2682889
Alignment:
Q  104 gtggttgaaggcgaaatttccttcacttccgttcaattatcatggttggtggtttagtccattcacaattttgagcatagactaatagttattt 197  Q
    ||||||||||| |||||||||| |  |||  ||||||| ||||||||||||| ||||||| ||||| ||  |||||||||  ||| ||||||||    
T  2682796 gtggttgaaggtgaaatttcctactattctcttcaattgtcatggttggtggcttagtcctttcaccatgctgagcataggttaaaagttattt 2682889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 197
Target Start/End: Original strand, 7155453 - 7155546
Alignment:
Q  104 gtggttgaaggcgaaatttccttcacttccgttcaattatcatggttggtggtttagtccattcacaattttgagcatagactaatagttattt 197  Q
    |||||||||||  |||||| |||| || || |||||||||||| | |||||||||||||| |||||  |  ||||||||| |||| ||||||||    
T  7155453 gtggttgaaggaaaaattttcttctctacccttcaattatcatagatggtggtttagtccgttcaccgtactgagcataggctaagagttattt 7155546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 197
Target Start/End: Original strand, 12688220 - 12688314
Alignment:
Q  103 tgtggttgaaggcgaaatttccttcacttccgttcaattatcatggttggtggtttagtccattcacaattttgagcatagactaatagttattt 197  Q
    |||||||||||| ||||||| || | ||||| || ||||  ||||| |||||| ||||||| ||| |||| ||| |||||| ||||| |||||||    
T  12688220 tgtggttgaaggagaaatttactactcttccctttaatttacatggctggtggcttagtccgttcgcaatgttgggcataggctaattgttattt 12688314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 13 - 204
Target Start/End: Original strand, 35590166 - 35590357
Alignment:
Q  13 aaatctggaaagaaagaaataacatgctctttaaaggcactcaatgttcaattgttcacgtggttgataaaattaagccactcattttcatgtggttgaa 112  Q
    |||||||||||||||||||||||| | | || || ||||   |||| |||||| |||| ||||||||||||||||||   || | ||||| |||| ||||    
T  35590166 aaatctggaaagaaagaaataacaggtttttcaatggcaaagaatgctcaattattcaggtggttgataaaattaagttgctgactttcaggtggctgaa 35590265  T
Q  113 ggcgaaatttccttcacttccgttcaattatcatggttggtggtttagtccattcacaattttgagcatagactaatagttatttgctttct 204  Q
    |||||| | ||| |  ||||| ||||| ||||||||||||||| |||| || ||| | |||||| |||||| |||||||||| | |||||||    
T  35590266 ggcgaagtatccgtgtcttcccttcaactatcatggttggtggcttagccccttctctattttgggcataggctaatagttaatggctttct 35590357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 107 - 197
Target Start/End: Original strand, 30505752 - 30505842
Alignment:
Q  107 gttgaaggcgaaatttccttcacttccgttcaattatcatggttggtggtttagtccattcacaattttgagcatagactaatagttattt 197  Q
    |||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||  || || || ||| |||||| |||||||||||||    
T  30505752 gttgaaggagaaattttcttcacttcccttcaattatcatggttggtggtttagtctgtttaccatgttgggcataggctaatagttattt 30505842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 69 - 197
Target Start/End: Original strand, 27009197 - 27009325
Alignment:
Q  69 cacgtggttgataaaattaagccactcattttcatgtggttgaaggcgaaatttccttcacttccgttcaattatcatggttggtggtttagtccattca 168  Q
    |||||||||||||| |||||| | |||  ||| | ||| ||||||||||||||| |||| ||||| |||||||| |||||||||||| ||||||| || |    
T  27009197 cacgtggttgataagattaagtctctcgcttttaggtgattgaaggcgaaatttacttctcttcccttcaattaccatggttggtggcttagtccgttta 27009296  T
Q  169 caattttgagcatagactaatagttattt 197  Q
    | ||  ||  ||||| |||||||||||||    
T  27009297 ccatactggacataggctaatagttattt 27009325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 72 - 197
Target Start/End: Complemental strand, 36176738 - 36176614
Alignment:
Q  72 gtggttgataaaattaagccactcattttcatgtggttgaaggcgaaatttccttcacttccgttcaattatcatggttggtggtttagtccattcacaa 171  Q
    ||||||||||| |||||| | ||||  || |||||||| | || ||||||| |||| ||||  |||||||||||||||||||| ||||||||||| || |    
T  36176738 gtggttgataagattaagtcgctcacatttatgtggtt-atggtgaaatttgcttctcttctcttcaattatcatggttggtgttttagtccatttacca 36176640  T
Q  172 ttttgagcatagactaatagttattt 197  Q
    | ||| | |||| |||||||||||||    
T  36176639 tgttgggtataggctaatagttattt 36176614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 98 - 166
Target Start/End: Complemental strand, 45131197 - 45131129
Alignment:
Q  98 tttcatgtggttgaaggcgaaatttccttcacttccgttcaattatcatggttggtggtttagtccatt 166  Q
    ||||||||||||||||| ||||| | |||| ||||| |||||||||||||| |||||| ||||||||||    
T  45131197 tttcatgtggttgaaggggaaatatgcttctcttcccttcaattatcatgggtggtggcttagtccatt 45131129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 67 - 197
Target Start/End: Complemental strand, 37738188 - 37738057
Alignment:
Q  67 ttcacgtggttgataaaattaagccactcattttcatgtggt-tgaaggcgaaatttccttcacttccgttcaattatcatggttggtggtttagtccat 165  Q
    |||| |||| |||||| |||||| | |||| ||||||||||  |||||||||||||  || | ||||| || || | |||||| |||||| ||||||| |    
T  37738188 ttcaggtggctgataagattaagtcgctcactttcatgtggcctgaaggcgaaattcactactcttccctttaactttcatggctggtggcttagtccgt 37738089  T
Q  166 tcacaattttgagcatagactaatagttattt 197  Q
    |||| |||||| |||||| |||||||||||||    
T  37738088 tcaccattttgggcataggctaatagttattt 37738057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 67 - 197
Target Start/End: Original strand, 9840763 - 9840893
Alignment:
Q  67 ttcacgtggttgataaaattaagccactcattttcatgtggttgaaggcgaaatttccttcacttccgttcaattatcatggttggtggtttagtccatt 166  Q
    |||| ||||||||||| |||||  | |||  ||| ||||| |||||||| |||||| || | ||||| ||||||||||||||||||||| ||| ||| ||    
T  9840763 ttcaagtggttgataagattaaatcgctcgcttttatgtgattgaaggcaaaatttgctactcttccattcaattatcatggttggtggcttaatccgtt 9840862  T
Q  167 cacaattttgagcatagactaatagttattt 197  Q
    ||| ||  || |||||  |||||||||||||    
T  9840863 caccatgatgggcatatgctaatagttattt 9840893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 104 - 197
Target Start/End: Complemental strand, 33645901 - 33645808
Alignment:
Q  104 gtggttgaaggcgaaatttccttcacttccgttcaattatcatggttggtggtttagtccattcacaattttgagcatagactaatagttattt 197  Q
    |||||||||||  |||||| || | ||||| |||||||| |||||||||||| ||||||  ||||| ||||||| ||||| || ||||||||||    
T  33645901 gtggttgaaggaaaaatttgctactcttcctttcaattaccatggttggtgggttagtctgttcaccattttgaacataggctgatagttattt 33645808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 67 - 203
Target Start/End: Original strand, 31640236 - 31640372
Alignment:
Q  67 ttcacgtggttgataaaattaagccactcattttcatgtggttgaaggcgaaatttccttcacttccgttcaattatcatggttggtggtttagtccatt 166  Q
    |||| ||||| ||||| |||||| ||||   ||| | ||||||||||||||||||| |||| |||||  ||||||| ||||| |||||| ||||||| ||    
T  31640236 ttcaagtggtagataagattaagtcacttgcttttacgtggttgaaggcgaaatttgcttctcttcccctcaattaccatggatggtggcttagtccgtt 31640335  T
Q  167 cacaattttgagcatagactaatagttatttgctttc 203  Q
     |||||| |  |||||| ||| | ||||||| |||||    
T  31640336 tacaattataggcataggctagtggttatttcctttc 31640372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 101 - 163
Target Start/End: Original strand, 38409018 - 38409080
Alignment:
Q  101 catgtggttgaaggcgaaatttccttcacttccgttcaattatcatggttggtggtttagtcc 163  Q
    ||||| |||||||| ||||||  || ||||||| ||||||||||||||||||||||| |||||    
T  38409018 catgtagttgaaggtgaaattcgctacacttcccttcaattatcatggttggtggttcagtcc 38409080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 115
Target Start/End: Complemental strand, 37121046 - 37120943
Alignment:
Q  12 aaaatctggaaagaaagaaataacatgctctttaaaggcactcaatgttcaattgttcacgtggttgataaaattaagccactcattttcatgtggttga 111  Q
    |||||||| |||||||||||||||||| | || |||| ||   |||| || ||| ||||||||||||||||||| ||| | |||   || ||||||||||    
T  37121046 aaaatctgaaaagaaagaaataacatgatattcaaagtcaaggaatgctccattattcacgtggttgataaaataaagtcgctctcatttatgtggttga 37120947  T
Q  112 aggc 115  Q
    ||||    
T  37120946 aggc 37120943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 197
Target Start/End: Complemental strand, 27708288 - 27708158
Alignment:
Q  67 ttcacgtggttgataaaattaagccactcattttcatgtggttgaaggcgaaatttccttcacttccgttcaattatcatggttggtggtttagtccatt 166  Q
    |||| ||||||||||| |||||| | |||  ||| | |||||| |||||||||||| || | ||||| ||||||  ||||||||||||| ||| ||  ||    
T  27708288 ttcaggtggttgataagattaagtcgctcgcttttacgtggttaaaggcgaaatttgctactcttcccttcaatcttcatggttggtggcttaatctgtt 27708189  T
Q  167 cacaattttgagcatagactaatagttattt 197  Q
    |||  |  || |||||| |||||||||||||    
T  27708188 caccgtactgggcataggctaatagttattt 27708158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 162
Target Start/End: Complemental strand, 44736078 - 44735982
Alignment:
Q  66 gttcacgtggttgataaaattaagccactcattttcatgtggttgaaggcgaaatttccttcacttccgttcaattatcatggttggtggtttagtc 162  Q
    ||||| ||||| || || |||||| | |||| ||| ||||||||||||||||| |||  | | ||||| ||||||| |||||||| |||| ||||||    
T  44736078 gttcaggtggtcgacaagattaagtccctcacttttatgtggttgaaggcgaagtttaatactcttcccttcaattttcatggttagtggcttagtc 44735982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 183
Target Start/End: Complemental strand, 64443 - 64273
Alignment:
Q  13 aaatctggaaagaaagaaataacatgctctttaaaggcactcaatgttcaattgttcacgtggttgataaaattaagccactcattttcatgtggttgaa 112  Q
    |||| ||||||||||||||||||| | | ||||| ||||   |  ||||||||  ||| ||||| |||||||||||| | |||  |||| ||||||||||    
T  64443 aaatttggaaagaaagaaataacaggttatttaatggcaaggatagttcaattcctcaggtggtagataaaattaagtccctcgctttcttgtggttgaa 64344  T
Q  113 ggcgaaatttccttcacttccgttcaattatcatggttggtggtttagtccattcacaattttgagcatag 183  Q
    || |||||  ||||| ||| | ||||||||||||| ||||||| ||||||| ||||| |||||| ||||||    
T  64343 ggagaaatacccttctctttccttcaattatcatgcttggtggcttagtcctttcaccattttgggcatag 64273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 73 - 209
Target Start/End: Original strand, 40347982 - 40348118
Alignment:
Q  73 tggttgataaaattaagccactcattttcatgtggttgaaggcgaaatttccttcacttccgttcaattatcatggttggtggtttagtccattcacaat 172  Q
    |||| |||||||||||| | || |  |||||||||||||||||||| ||||| |  ||||| ||||| ||||||||||| ||| |||  || ||||| ||    
T  40347982 tggtagataaaattaagtcgctgacgttcatgtggttgaaggcgaagtttccatttcttcctttcaactatcatggttgatggcttaaccctttcactat 40348081  T
Q  173 tttgagcatagactaatagttatttgctttctttagt 209  Q
     |||  |||||||||||||||||| ||||||||||||    
T  40348082 gttggacatagactaatagttattggctttctttagt 40348118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 13 - 197
Target Start/End: Original strand, 34237097 - 34237281
Alignment:
Q  13 aaatctggaaagaaagaaataacatgctctttaaaggcactcaatgttcaattgttcacgtggttgataaaattaagccactcattttcatgtggttgaa 112  Q
    |||| |||||||||| |||||||||| | || | || ||   |||||||| |  |||| |||||||| ||||||||| | ||| ||||   |||||||||    
T  34237097 aaatttggaaagaaaaaaataacatgtttttcagagacaaagaatgttcagtaattcaggtggttgacaaaattaagtctctcgttttttggtggttgaa 34237196  T
Q  113 ggcgaaatttccttcacttccgttcaattatcatggttggtggtttagtccattcacaattttgagcatagactaatagttattt 197  Q
    ||||||||||| |    |||| ||||||||||||||||||||| ||||||| ||||| || ||| |||||| |||| | ||||||    
T  34237197 ggcgaaatttcatattattcccttcaattatcatggttggtggcttagtcctttcaccatgttgggcataggctaaaaattattt 34237281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 162
Target Start/End: Complemental strand, 17116500 - 17116410
Alignment:
Q  72 gtggttgataaaattaagccactcattttcatgtggttgaaggcgaaatttccttcacttccgttcaattatcatggttggtggtttagtc 162  Q
    ||||||||||| |||||| |||||   || ||||||||||||||||||| | |||| ||||| |||| |||||||||||||||| ||||||    
T  17116500 gtggttgataagattaagtcactcgcatttatgtggttgaaggcgaaatatgcttctcttcccttcagttatcatggttggtggcttagtc 17116410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 55 - 204
Target Start/End: Original strand, 27076557 - 27076707
Alignment:
Q  55 aatgttcaattgttcacgtggttgataaaattaagccactcattttcatgtggttgaaggcgaaatttccttcacttccgttcaattatcatggttggtg 154  Q
    ||||||||||| |||| ||||||||||||||| ||   || | ||||| ||||| ||||||||| ||||| ||  |||| ||||| ||||||||||||||    
T  27076557 aatgttcaattattcaagtggttgataaaattgagtagctgactttcaggtggtagaaggcgaagtttccatctattcccttcaactatcatggttggtg 27076656  T
Q  155 gtttagtc-cattcacaattttgagcatagactaatagttatttgctttct 204  Q
    | |||| | ||||||| || | |  ||||| |||||||||||| |||||||    
T  27076657 gcttagcctcattcactatatcggacataggctaatagttattggctttct 27076707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 55 - 204
Target Start/End: Complemental strand, 27201744 - 27201594
Alignment:
Q  55 aatgttcaattgttcacgtggttgataaaattaagccactcattttcatgtggttgaaggcgaaatttccttcacttccgttcaattatcatggttggtg 154  Q
    ||||||||||| |||| ||||||||||||||| ||   || | ||||| ||||| ||||||||| ||||| ||  |||| ||||| ||||||||||||||    
T  27201744 aatgttcaattattcaagtggttgataaaattgagtagctgactttcaggtggtagaaggcgaagtttccatctattcccttcaactatcatggttggtg 27201645  T
Q  155 gtttagtc-cattcacaattttgagcatagactaatagttatttgctttct 204  Q
    | |||| | ||||||| || | |  ||||| |||||||||||| |||||||    
T  27201644 gcttagcctcattcactatatcggacataggctaatagttattggctttct 27201594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 155
Target Start/End: Original strand, 26569739 - 26569792
Alignment:
Q  102 atgtggttgaaggcgaaatttccttcacttccgttcaattatcatggttggtgg 155  Q
    |||||||||||||||||| || |||| ||||| |||||||||||||| ||||||    
T  26569739 atgtggttgaaggcgaaacttgcttctcttcccttcaattatcatggatggtgg 26569792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 193
Target Start/End: Complemental strand, 49035466 - 49035377
Alignment:
Q  104 gtggttgaaggcgaaatttccttcacttccgttcaattatcatggttggtggtttagtccattcacaattttgagcatagactaatagtt 193  Q
    |||||||||||||||| || |||| ||||| ||||||||||||||| |||| |  | ||| ||||| ||| || |||||| |||||||||    
T  49035466 gtggttgaaggcgaaagttgcttctcttcccttcaattatcatggtaggtgttagaatccgttcaccattctgggcataggctaatagtt 49035377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 166
Target Start/End: Original strand, 12092705 - 12092772
Alignment:
Q  99 ttcatgtggttgaaggcgaaatttccttcacttccgttcaattatcatggttggtggtttagtccatt 166  Q
    |||||||||||||||||||||||| | || ||||| || || |||||||| | |||| ||||||||||    
T  12092705 ttcatgtggttgaaggcgaaattttcctctcttcccttaaactatcatggatagtggcttagtccatt 12092772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 36
Target Start/End: Complemental strand, 4998103 - 4998075
Alignment:
Q  8 atggaaaatctggaaagaaagaaataaca 36  Q
    |||||||||||||||||||||||||||||    
T  4998103 atggaaaatctggaaagaaagaaataaca 4998075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 190
Target Start/End: Original strand, 42017819 - 42017907
Alignment:
Q  102 atgtggttgaaggcgaaatttccttcacttccgttcaattatcatggttggtggtttagtccattcacaattttgagcatagactaata 190  Q
    |||||||||||||||||| |||||   ||  | ||||| |||||||| |||||| ||||||| ||||| || ||| |||||| ||||||    
T  42017819 atgtggttgaaggcgaaacttcctaagctctctttcaactatcatggatggtggcttagtccgttcactatgttgggcataggctaata 42017907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 99 - 225
Target Start/End: Original strand, 39839933 - 39840059
Alignment:
Q  99 ttcatgtggttgaaggcgaaatttccttcacttccgttcaattatcatggttggtggtttagtccattcacaattttgagcatagactaatagttatttg 198  Q
    ||||||||||||||| |||| ||||| || ||||| || || ||||||||||||||| ||||||| ||||| || ||| | ||||  |||| |||| | |    
T  39839933 ttcatgtggttgaagacgaagtttccatctcttccctttaactatcatggttggtggcttagtcccttcaccatgttgtgtataggttaattgttagtgg 39840032  T
Q  199 ctttctttagttactgctttttgtttt 225  Q
     |||||| |||||||| ||||||||||    
T  39840033 ttttcttaagttactgttttttgtttt 39840059  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 72 - 197
Target Start/End: Complemental strand, 19315100 - 19314975
Alignment:
Q  72 gtggttgataaaattaagccactcattttcatgtggttgaaggcgaaatttccttcacttccgttcaattatcatggttggtggtttagtccattcacaa 171  Q
    ||||||||||| |||||| ||||||  || ||||||||||||||||||||| ||| | |||| |  |||||||||||||||||| |||| || || || |    
T  19315100 gtggttgataagattaagtcactcacatttatgtggttgaaggcgaaatttgctttatttccctggaattatcatggttggtggcttagcccgtttacca 19315001  T
Q  172 ttttgagcatagactaatagttattt 197  Q
    |  |  |||||| |||||||||||||    
T  19315000 tgctaggcataggctaatagttattt 19314975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 99 - 163
Target Start/End: Complemental strand, 26778789 - 26778725
Alignment:
Q  99 ttcatgtggttgaaggcgaaatttccttcacttccgttcaattatcatggttggtggtttagtcc 163  Q
    |||||||||||||||| |||||||  ||| ||| | |||||||||||||||||||||||||||||    
T  26778789 ttcatgtggttgaaggtgaaatttttttctctttccttcaattatcatggttggtggtttagtcc 26778725  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 193
Target Start/End: Complemental strand, 12831610 - 12831489
Alignment:
Q  72 gtggttgataaaattaagccactcattttcatgtggttgaaggcgaaatttccttcacttccgttcaattatcatggttggtggtttagtccattcacaa 171  Q
    ||||||||||| |||||| |  ||  ||| ||||||||||||| |||||||    | ||||| ||||||| ||||||||||||| ||||||| ||||| |    
T  12831610 gtggttgataagattaagtcgatctcttttatgtggttgaaggtgaaatttaacacgcttcccttcaattttcatggttggtggcttagtccgttcacta 12831511  T
Q  172 ttttgagcatagactaatagtt 193  Q
    | ||| ||||||  ||||||||    
T  12831510 tgttgggcataggttaatagtt 12831489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 193
Target Start/End: Complemental strand, 12863585 - 12863464
Alignment:
Q  72 gtggttgataaaattaagccactcattttcatgtggttgaaggcgaaatttccttcacttccgttcaattatcatggttggtggtttagtccattcacaa 171  Q
    ||||||||||| |||||| |  ||  ||| ||||||||||||| |||||||    | ||||| ||||||| ||||||||||||| ||||||| ||||| |    
T  12863585 gtggttgataagattaagtccatctcttttatgtggttgaaggtgaaatttaacacgcttcccttcaattttcatggttggtggcttagtccgttcacta 12863486  T
Q  172 ttttgagcatagactaatagtt 193  Q
    | ||| ||||||  ||||||||    
T  12863485 tgttgggcataggttaatagtt 12863464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 166
Target Start/End: Original strand, 18967885 - 18967949
Alignment:
Q  102 atgtggttgaaggcgaaatttccttcacttccgttcaattatcatggttggtggtttagtccatt 166  Q
    ||||||||||||||||||||| |||| ||||| || ||| ||||||| || ||| ||||||||||    
T  18967885 atgtggttgaaggcgaaatttgcttctcttccatttaatgatcatggatgatggcttagtccatt 18967949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 155
Target Start/End: Original strand, 29994652 - 29994703
Alignment:
Q  104 gtggttgaaggcgaaatttccttcacttccgttcaattatcatggttggtgg 155  Q
    ||||||||||| ||| |||||||  ||||| |||||||||||||||||||||    
T  29994652 gtggttgaaggtgaagtttccttttcttcccttcaattatcatggttggtgg 29994703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 193
Target Start/End: Complemental strand, 27482713 - 27482647
Alignment:
Q  127 cacttccgttcaattatcatggttggtggtttagtccattcacaattttgagcatagactaatagtt 193  Q
    ||||||| |||||||||||||| |||||| ||||||| ||||| || ||| |||||| |||| ||||    
T  27482713 cacttcccttcaattatcatggctggtggcttagtccgttcaccatgttgggcataggctaagagtt 27482647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 193
Target Start/End: Original strand, 16610602 - 16610691
Alignment:
Q  104 gtggttgaaggcgaaatttccttcacttccgttcaattatcatggttggtggtttagtccattcacaattttgagcatagactaatagtt 193  Q
    |||||||||| |||| |||  ||| ||||| |||||||||||||| |||||| ||||||| || || |||||  |||| | |||||||||    
T  16610602 gtggttgaagacgaagtttgtttctcttcccttcaattatcatgggtggtggcttagtccgtttaccattttaggcattggctaatagtt 16610691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 206
Target Start/End: Original strand, 11305849 - 11305955
Alignment:
Q  98 tttcatgtggttgaaggcgaaatttccttcacttccgttcaattatcatggttggtggtttagtccattcacaattttgagcatagactaatagttattt 197  Q
    |||| ||||||||||||||||| |||||   || || ||||| || |||| ||||||| ||||||||||||  || ||| |||||| ||||| |||||||    
T  11305849 tttcttgtggttgaaggcgaaaattcctaatctccccttcaactaccatgtttggtggcttagtccattcaatatgttgggcataggctaat-gttattt 11305947  T
Q  198 gctttcttt 206  Q
     ||||||||    
T  11305948 -ctttcttt 11305955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 25942655 - 25942615
Alignment:
Q  129 cttccgttcaattatcatggttggtggtttagtccattcac 169  Q
    ||||||||||||||| ||||||||||| ||||||| |||||    
T  25942655 cttccgttcaattattatggttggtggcttagtccgttcac 25942615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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