View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2994-Insertion-12 (Length: 291)
Name: NF2994-Insertion-12
Description: NF2994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2994-Insertion-12 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 8 - 291
Target Start/End: Original strand, 28931330 - 28931613
Alignment:
| Q |
8 |
gaaatgatattgttccttattcttattatatgtatatatatgttatcaattaatttgttctacctatttcttgctcaatgtttattaggagagtagggat |
107 |
Q |
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| T |
28931330 |
gaaatgatattgttccttattcttattatatgtatatatatgttatcaattaatttgttctagctatttcttgctcaatgtttattagaagagtagggat |
28931429 |
T |
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| Q |
108 |
gttacatgtatacaggaaaaccctttaattgagttatgagactagatatttaaatcaccttcctaaaacaaatgaaggaatagatctaacctttcatgct |
207 |
Q |
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| T |
28931430 |
gttacatgtatacaggaaaaccctttaattgagttatgagactagatatttaaatcaccttcctaaaacaaatgaaggaatagatctaacctttcatgct |
28931529 |
T |
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| Q |
208 |
cagacatgaaaaagcttgctctgttgnnnnnnncttaggttttctttcctctcacttatagattttattgtctcctatgtttga |
291 |
Q |
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| T |
28931530 |
cagacatgaaaaagcttgctctgttgtttttttcttaggttttctttcctctcacttatagattttattgtctgctatgtttga |
28931613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 12 - 231
Target Start/End: Complemental strand, 35122821 - 35122609
Alignment:
| Q |
12 |
tgatattgttccttattcttattatatgtatatatatgttatcaattaatttgttctacctatttcttgctcaatgtttattaggagagtagggatgtta |
111 |
Q |
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| T |
35122821 |
tgatattgttccttattcttat---atgtatgtat--gttatcaattaattttttctagaaatttcctactcggtgtttattaggacaatagggatgtta |
35122727 |
T |
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| Q |
112 |
catgtatacaggaaaaccctttaattgagttatgagactagatatttaaatcaccttcctaaaacaaatgaaggaatagatctaacctttcatgctcaga |
211 |
Q |
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||| |||||||| ||||||||| ||||||||| |||||| ||||||||||||| | | | |||||||| ||||||||| ||||||||||||| || |
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| T |
35122726 |
catatatacagggaaacccttt-attgagttacgagactctgtatttaaatcaccgttccgagacaaatgagagaatagatccaacctttcatgctagga |
35122628 |
T |
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| Q |
212 |
catgaaaaagcttgctctgt |
231 |
Q |
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||| |||||||||| ||||| |
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| T |
35122627 |
cat-aaaaagcttgttctgt |
35122609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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