View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2994-Insertion-14 (Length: 223)
Name: NF2994-Insertion-14
Description: NF2994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2994-Insertion-14 |
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| [»] chr7 (1 HSPs) |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 8 - 223
Target Start/End: Complemental strand, 44501464 - 44501249
Alignment:
| Q |
8 |
gaaggatctttggaaacgtcttcctgcacttatagcattcttcagattttcacacttacaagatattcaataaattcgtgtctaaggttttatctcttca |
107 |
Q |
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| T |
44501464 |
gaaggatctttggaaacgtcttcctgcacttatagcattcttcagattttcacactttcaagatattcaataaattcgtgtctaaggttttatctcttca |
44501365 |
T |
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| Q |
108 |
cgattcctctatctcactacacactctcaatttcagccataatggtcgcttggagtttcacctactcaaaaggattgtgaattgtgctattttacacaaa |
207 |
Q |
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| T |
44501364 |
cgattcctctatctcactacacactctcaatttcagccataatggttgcttggagtttcacctactcaaaaggattgtgaattgtgctatttcacacata |
44501265 |
T |
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| Q |
208 |
gtccagctgtcaggac |
223 |
Q |
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||||||| |||||||| |
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| T |
44501264 |
gtccagcggtcaggac |
44501249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 9 - 125
Target Start/End: Complemental strand, 20995083 - 20994965
Alignment:
| Q |
9 |
aaggatctttggaaacgtcttcctgcacttata--gcattcttcagattttcacacttacaagatattcaataaattcgtgtctaaggttttatctcttc |
106 |
Q |
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| T |
20995083 |
aaggatctttggaaacgtcttcctgctcttacattgcataatagagactttcgtactttcaagatattcaccacattcgtgtctaagattttatctcttc |
20994984 |
T |
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| Q |
107 |
acgattcctctatctcact |
125 |
Q |
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| T |
20994983 |
gtgattcctctatctcact |
20994965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 61 - 116
Target Start/End: Original strand, 20977477 - 20977532
Alignment:
| Q |
61 |
acttacaagatattcaataaattcgtgtctaaggttttatctcttcacgattcctc |
116 |
Q |
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| T |
20977477 |
acttacaagatattcaccaaattcgtgtctaagattttatctcttcgcgattcctc |
20977532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 125
Target Start/End: Complemental strand, 20981921 - 20981806
Alignment:
| Q |
12 |
gatctttggaaacgtcttcctgcacttata--gcattcttcagattttcacacttacaagatattcaataaattcgtgtctaaggttttatctcttcacg |
109 |
Q |
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| T |
20981921 |
gatctttggaaacgtcttcctgctcttacattgcataatagagactttcgtaatttcaagatattcaccacattcgtgtctaagattttatctcttcgtg |
20981822 |
T |
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| Q |
110 |
attcctctatctcact |
125 |
Q |
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|||||||||||||||| |
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| T |
20981821 |
attcctctatctcact |
20981806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 140
Target Start/End: Complemental strand, 2996450 - 2996371
Alignment:
| Q |
61 |
acttacaagatattcaataaattcgtgtctaaggttttatctcttcacgattcctctatctcactacacactctcaattt |
140 |
Q |
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| T |
2996450 |
acttacaagaaattcaccaaatttgtgtctaaggttttatctctttgcgattcctctatttcattgcagactctcgattt |
2996371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 214
Target Start/End: Original strand, 20949493 - 20949649
Alignment:
| Q |
61 |
acttacaagatattcaataaattcgtgtctaaggttttatctcttcacgattcctctatctcactacacactc-tcaatttcagc--cataatggtcgct |
157 |
Q |
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| T |
20949493 |
acttacaagatattcaccaaattcgtgtctaaaattttatctctttgtgattcctctatcacattataagctcttgattttaagcatcatattggtcgtt |
20949592 |
T |
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| Q |
158 |
tggagtttcacctactcaaaaggattgtgaattgtgctattttacacaaagtccagc |
214 |
Q |
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| ||| |||| ||||||||||||||||||||| |||||| |||||| ||||||| |
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| T |
20949593 |
tagagcctcacatactcaaaaggattgtgaattacgctattaaacacaatgtccagc |
20949649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 134
Target Start/End: Complemental strand, 45856850 - 45856777
Alignment:
| Q |
61 |
acttacaagatattcaataaattcgtgtctaaggttttatctcttcacgattcctctatctcactacacactct |
134 |
Q |
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|||| ||||||||||| || || |||||||||||||||||||||| |||||||||||| |||| ||| |||| |
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| T |
45856850 |
actttcaagatattcaccaactttgtgtctaaggttttatctcttcgtgattcctctatcgcactccacgctct |
45856777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 125
Target Start/End: Complemental strand, 45870502 - 45870386
Alignment:
| Q |
11 |
ggatctttggaaacgtcttcctgcacttata--gcattcttcagattttcacacttacaagatattcaataaattcgtgtctaaggttttatctcttcac |
108 |
Q |
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|||||||||||||||||||||| | |||||| ||||||| || |||| ||||| |||||||||| | ||| || |||| |||||||||||| | |
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| T |
45870502 |
ggatctttggaaacgtcttccttctcttatattgcattctgatgactttcgaacttataagatattcaccagatttgtttctagggttttatctctccgg |
45870403 |
T |
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| Q |
109 |
gattcctctatctcact |
125 |
Q |
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||||||||||||||||| |
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| T |
45870402 |
gattcctctatctcact |
45870386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 190
Target Start/End: Original strand, 20948805 - 20948934
Alignment:
| Q |
64 |
tacaagatattcaataaattcgtgtctaaggttttatctcttcacgattcctctatctcactacacactctcaatttca---gccataatggtcgcttgg |
160 |
Q |
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||||||||||||| || || ||||||||| |||||||||||| ||| |||||||| || |||||||||| |||| | | |||| || |||||| | |
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| T |
20948805 |
tacaagatattcaccaagtttgtgtctaagattttatctcttcgtgatccctctatcgcaatacacactcttgattttaagcgtcatattgttcgcttag |
20948904 |
T |
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| Q |
161 |
agtttcacctactcaaaaggattgtgaatt |
190 |
Q |
| |
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|| |||| |||| |||||||||||||||| |
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| T |
20948905 |
agcctcacatacttaaaaggattgtgaatt |
20948934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 134
Target Start/End: Complemental strand, 45881873 - 45881805
Alignment:
| Q |
66 |
caagatattcaataaattcgtgtctaaggttttatctcttcacgattcctctatctcactacacactct |
134 |
Q |
| |
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||||||||||| ||||| ||||| |||||||||||||| |||||||||||| |||| |||||||| |
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| T |
45881873 |
caagatattcaccaaatttgtgtcgaaggttttatctctcagtgattcctctatcacactccacactct |
45881805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 128
Target Start/End: Original strand, 3978166 - 3978287
Alignment:
| Q |
9 |
aaggatctttggaaacgtcttcctgcacttata--gcattcttcagattttcacacttacaagatattcaataaattcgtgtctaaggttttatctcttc |
106 |
Q |
| |
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|||||||||||||||||||||||| | |||| | |||||||||||| ||| ||||||||| ||||| | ||| |||||||| ||||||| ||||| |
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| T |
3978166 |
aaggatctttggaaacgtcttcctactcttacattgcattcttcagactttggagcttacaagaaattcaccagattagtgtctaaagttttatttcttc |
3978265 |
T |
|
| Q |
107 |
acgattcctctatctcactaca |
128 |
Q |
| |
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||||||||||||| ||||||| |
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| T |
3978266 |
gcgattcctctatcgcactaca |
3978287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 151 - 223
Target Start/End: Complemental strand, 7976683 - 7976611
Alignment:
| Q |
151 |
ggtcgcttggagtttcacctactcaaaaggattgtgaattgtgctattttacacaaagtccagctgtcaggac |
223 |
Q |
| |
|
|||||||| ||| |||| ||||||||||||||||||||| |||||||| |||||| ||||||| || ||||| |
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| T |
7976683 |
ggtcgcttagagcctcacttactcaaaaggattgtgaattatgctatttcacacaatgtccagcggttaggac |
7976611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 150
Target Start/End: Complemental strand, 38142156 - 38142015
Alignment:
| Q |
11 |
ggatctttggaaacgtcttcctgcacttata--gcattcttcagattttcacact-tacaagatattcaataaattcgtgtctaaggttttatctcttca |
107 |
Q |
| |
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|||||| ||||||| ||||||||| |||||| | |||||||||| |||| ||| ||| ||||||||| ||||||||| || ||||||| |||||| |
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| T |
38142156 |
ggatctatggaaacttcttcctgctcttatattggattcttcagactttcgaactatacc-gatattcaacaaattcgtgcatagggttttaactcttcg |
38142058 |
T |
|
| Q |
108 |
cgattcctctatctcactacacactctcaatttcagccataat |
150 |
Q |
| |
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||||||||| || |||| || ||||||||||||| |||||| |
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| T |
38142057 |
tgattcctctctcgcactgaactctctcaatttcagacataat |
38142015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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