View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2994-Insertion-23 (Length: 95)
Name: NF2994-Insertion-23
Description: NF2994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2994-Insertion-23 |
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| [»] chr8 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 89; Significance: 2e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 2e-43
Query Start/End: Original strand, 7 - 95
Target Start/End: Original strand, 2352151 - 2352239
Alignment:
| Q |
7 |
atttaaaatgttcaaaagttgatcccttacgtaaccgatgtcagcaaaagttcatcatttccgtcaaattttgagttaactctgtctaa |
95 |
Q |
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| T |
2352151 |
atttaaaatgttcaaaagttgatcccttacgtaaccgatgtcagcaaaagttcatcatttccgtcaaattttgagttaactctgtctaa |
2352239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 8e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 8e-18
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 38916769 - 38916842
Alignment:
| Q |
22 |
aagttgatcccttacgtaaccgatgtcagcaaaagttcatcatttccgtcaaattttgagttaactctgtctaa |
95 |
Q |
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| T |
38916769 |
aagttgatctcttacgtcactgatgtcaacataagttcatcctttccgtcaaattttgagttaactctgcctaa |
38916842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.0000000000005
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 31528004 - 31528077
Alignment:
| Q |
22 |
aagttgatcccttacgtaaccgatgtcagcaaaagttcatcatttccgtcaaattttgagttaactctgtctaa |
95 |
Q |
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|||||| | |||||| | || ||||||| || || ||||||||||||||||||||||||||||||| ||||||| |
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| T |
31528004 |
aagttggttccttacattactgatgtcaacataaattcatcatttccgtcaaattttgagttaactgtgtctaa |
31528077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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