View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2994-Insertion-24 (Length: 65)
Name: NF2994-Insertion-24
Description: NF2994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2994-Insertion-24 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 61; Significance: 6e-27; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 6e-27
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 2292911 - 2292971
Alignment:
| Q |
5 |
acatccccatcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttt |
65 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2292911 |
acatccccatcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttt |
2292971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 6e-27
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 2309242 - 2309302
Alignment:
| Q |
5 |
acatccccatcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttt |
65 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2309242 |
acatccccatcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttt |
2309302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 61; E-Value: 6e-27
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 2320231 - 2320291
Alignment:
| Q |
5 |
acatccccatcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttt |
65 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2320231 |
acatccccatcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttt |
2320291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 2326085 - 2326145
Alignment:
| Q |
5 |
acatccccatcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttt |
65 |
Q |
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|||||||||||||||||| | | |||| ||||| ||||||| | ||||||||||||||||| |
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| T |
2326085 |
acatccccatcatcacaagcatacaatggctccgaaaatcattttcccaacttgaaccttt |
2326145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 2302530 - 2302590
Alignment:
| Q |
5 |
acatccccatcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttt |
65 |
Q |
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||||||||||| |||||||| | || ||||||| |||| || |||||||||||||||||| |
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| T |
2302530 |
acatccccatcctcacaaacattcagttgctccgaaaaccatcctcccaacttgaaccttt |
2302590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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