View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2994-Insertion-3 (Length: 619)
Name: NF2994-Insertion-3
Description: NF2994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2994-Insertion-3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 609; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 609; E-Value: 0
Query Start/End: Original strand, 7 - 619
Target Start/End: Original strand, 14582421 - 14583033
Alignment:
| Q |
7 |
aaaacaaacatggagagaagtgtgagagggtattaaacaaaaaccctacacactctccctccattttcctaaacagtttgctttgtgctttagcttttgg |
106 |
Q |
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| T |
14582421 |
aaaacaaacatggagagaagtgtgagagggtattaaacaaaaaccctacacactctccctccattttcctaaacagtttgctttgtgctttagcttttgg |
14582520 |
T |
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| Q |
107 |
cttctcatatcacaaagggattatgcttttttctgagtagcagaagcaaataattaagcatttttctccaaaggatcagaagcttttgttatagcatggc |
206 |
Q |
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| T |
14582521 |
cttctcatatcacaaagggattatgcttttttctgagtagcagaagcaaataattaagcatttttctccaaaggatcagaagcttttgttatagcatggc |
14582620 |
T |
|
| Q |
207 |
aaaccggcaagtcacaaaaaggcaatggattcctttttggagtcttaatggctatgtatcaatcactctatctatgtagcactgacactttagattgaag |
306 |
Q |
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| T |
14582621 |
aaaccggcaagtcacaaaaaggcaatggattcctttttggagtcttaatggctatgtatcaatcactctatctatgtagcactgacactttagattgaag |
14582720 |
T |
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| Q |
307 |
gcgcgtcccgtgcctgtgtttgtgcttcgtagattgttatagttattttcttgcagtagaatgtaataataaacataaagatggtgttgtcttcctttga |
406 |
Q |
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| T |
14582721 |
gcgcgtcccgtgcctgtgtttgtgcttcgtagattgttatagttattttcttgcagtagaatgtaataataaacataaagatggtgttgtcttcctttga |
14582820 |
T |
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| Q |
407 |
gaagttgccaactttatgatgtacttcaattcactcaatttgcagctgactagagtctgttcttgtttcagtttctgcagatgagtaaggtaggtaactg |
506 |
Q |
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| T |
14582821 |
gaaattgccaactttatgatgtacttcaattcactcaatttgcagctgactagagtctgttcttgtttcagtttctgcagatgagtaaggtaggtaactg |
14582920 |
T |
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| Q |
507 |
ttatcattaattcatgttccttttcttctgtgttgttctctttttccacatgaatgtatgcttgtttgtttgtgttaagagttattatgatcttatgaga |
606 |
Q |
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| T |
14582921 |
ttatcattaattcatgttccttttcttctgtgttgttctctttttccacatgaatgtatgcttgtttgtttgtgttaagagttattatgatcttatgaga |
14583020 |
T |
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| Q |
607 |
agttaaagaatgt |
619 |
Q |
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| T |
14583021 |
agttaaagaatgt |
14583033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 279 - 309
Target Start/End: Complemental strand, 37084194 - 37084164
Alignment:
| Q |
279 |
tatgtagcactgacactttagattgaaggcg |
309 |
Q |
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| T |
37084194 |
tatgtagcactgacactttagattgaaggcg |
37084164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 276 - 308
Target Start/End: Original strand, 11818224 - 11818256
Alignment:
| Q |
276 |
atctatgtagcactgacactttagattgaaggc |
308 |
Q |
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| T |
11818224 |
atctatgtagcactgacacttcagattgaaggc |
11818256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 278 - 306
Target Start/End: Complemental strand, 17519125 - 17519097
Alignment:
| Q |
278 |
ctatgtagcactgacactttagattgaag |
306 |
Q |
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| T |
17519125 |
ctatgtagcactgacactttagattgaag |
17519097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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