View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2994-Insertion-5 (Length: 588)
Name: NF2994-Insertion-5
Description: NF2994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2994-Insertion-5 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 498; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 7 - 588
Target Start/End: Original strand, 11688748 - 11689329
Alignment:
| Q |
7 |
aaatacgaattaaaaaataaaaccgatgggatcggtaaggaacccaaatacataccccaatagattaagctctattgctgccttatactgagaaggaatt |
106 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11688748 |
aaatacaaattaaaaaataaaaccgatgggatcggtaaggaacccaaatacataccccaatagattaagctctattgctgccttatactgagaaggaatt |
11688847 |
T |
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| Q |
107 |
tccatcaatgctgcaagtgcaaatgctgcttcttttcgtgaaggaggtgtattctttgacataatctccgtgaaattcacaaactaaagagaataaagga |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
11688848 |
tccatcaatgctgcaagtgcaaatgctgcttcttttcgtgaaggaggtgtattctttgacataatctccgtgaaattcacaaactaaagagaacaaaggg |
11688947 |
T |
|
| Q |
207 |
aaattcgcaatgattcagtggatcaatttcgacaagtaatgtcatttgaacaagatttaaaggaagttctgtgtgcttctcatcacaaacctggaaatta |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11688948 |
aaattcgcaatgattcagtggatcaatttcgacaagtaatgtcatttgaacaagatttaaaggaagttctgtgtgcttctcatcacaaacctggaaatta |
11689047 |
T |
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| Q |
307 |
tcaaaggcacgagatggaatgttatcgtcaaattctttcatcatgtcccatggtccgtctccaacaccaaccaatatgattgaaagaggaagcttactgt |
406 |
Q |
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| T |
11689048 |
tcgaaggcacgagatggaatattatcgtcaaattctttcatcatgtcccatggtccatctccaacaccaaccaatataattgaaagaggaagcttactgt |
11689147 |
T |
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| Q |
407 |
tataaggaaaacatataagatatgatatttcaaaaaatatatattctgaagcaaaaactacatcagagtcacctagcccggacaatggcgtccatagtct |
506 |
Q |
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| T |
11689148 |
tataaataaaacatataagatatgatgtttcaaaaaagatagattctgaagcaaaaactacatcagagtcacctagcccggacaatggcatccatagtct |
11689247 |
T |
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| Q |
507 |
tctgttcctgtggacttagccttccatattcagtgtcaacacttcttgttacctgcatcgaccgttgttgatatcgggtgag |
588 |
Q |
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| T |
11689248 |
tctgttcctgtggacttagttttccatactcagtgtcaacacttcttgttacctacatcgaccattgtagatgtcgagtgag |
11689329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 343 - 397
Target Start/End: Complemental strand, 30955165 - 30955111
Alignment:
| Q |
343 |
ttcatcatgtcccatggtccgtctccaacaccaaccaatatgattgaaagaggaa |
397 |
Q |
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| T |
30955165 |
ttcaccatgtcccaaggtccatctccaacaccaaccaatatgattgaaagaggaa |
30955111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 88 - 198
Target Start/End: Complemental strand, 30959238 - 30959128
Alignment:
| Q |
88 |
cttatactgagaaggaatttccatcaatgctgcaagtgcaaatgctgcttcttttcgtgaaggaggtgtattctttgacataatctccgtgaaattcaca |
187 |
Q |
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||||||||||||||| |||| ||| |||||| | || ||||||||||| |||||||||| | ||| | || |||||||| || |||| |||||||||| |
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| T |
30959238 |
cttatactgagaagggattttcatgaatgcttcgagagcaaatgctgcctcttttcgtgtaagagaaatgttgtttgacatgatttccgcgaaattcaca |
30959139 |
T |
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| Q |
188 |
aactaaagaga |
198 |
Q |
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||||||||||| |
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| T |
30959138 |
aactaaagaga |
30959128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 343 - 406
Target Start/End: Complemental strand, 30959003 - 30958940
Alignment:
| Q |
343 |
ttcatcatgtcccatggtccgtctccaacaccaaccaatatgattgaaagaggaagcttactgt |
406 |
Q |
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| T |
30959003 |
ttcatcttgtcccaaggtccatctccaacaccaaccaatatgattgatagaggaaatttactgt |
30958940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 160 - 192
Target Start/End: Complemental strand, 30955659 - 30955627
Alignment:
| Q |
160 |
ctttgacataatctccgtgaaattcacaaacta |
192 |
Q |
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| T |
30955659 |
ctttgacataatttccgtgaaattcacaaacta |
30955627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 89; Significance: 1e-42; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 67 - 195
Target Start/End: Complemental strand, 7474464 - 7474336
Alignment:
| Q |
67 |
tagattaagctctattgctgccttatactgagaaggaatttccatcaatgctgcaagtgcaaatgctgcttcttttcgtgaaggaggtgtattctttgac |
166 |
Q |
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| T |
7474464 |
tagattaagctctattgcggccttatactgagaaggaatttccatcaatgctgcgagagcaaatgctgcctcttttcgtgaaggaggaatgttcttcgac |
7474365 |
T |
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| Q |
167 |
ataatctccgtgaaattcacaaactaaag |
195 |
Q |
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| T |
7474364 |
ataagttccgtgaaattcacaaactaaag |
7474336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 487 - 563
Target Start/End: Complemental strand, 7474039 - 7473963
Alignment:
| Q |
487 |
gacaatggcgtccatagtcttctgttcctgtggacttagccttccatattcagtgtcaacacttcttgttacctgca |
563 |
Q |
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| T |
7474039 |
gacaatggcatccacagtcttctgctcctgtggactgagccttccatgttcagtgtcaatacttcttgttacctgca |
7473963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 334 - 406
Target Start/End: Complemental strand, 7474194 - 7474122
Alignment:
| Q |
334 |
tcaaattctttcatcatgtcccatggtccgtctccaacaccaaccaatatgattgaaagaggaagcttactgt |
406 |
Q |
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| T |
7474194 |
tcaaactccttcatcatgtcccaaggtccatctccaacaccaaccaatatgatcgaaagaggaaatttactgt |
7474122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 292 - 380
Target Start/End: Original strand, 37318285 - 37318373
Alignment:
| Q |
292 |
caaacctggaaattatcaaaggcacgagatggaatgttatcgtcaaattctttcatcatgtcccatggtccgtctccaacaccaaccaa |
380 |
Q |
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|||||||| ||||| || ||||| |||| |||||| |||||||||||||| ||||||| ||||| ||||| |||||||| |||||||| |
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| T |
37318285 |
caaacctgaaaattgtcgaaggctcgagctggaatattatcgtcaaattccctcatcatatcccacggtccatctccaactccaaccaa |
37318373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 295 - 389
Target Start/End: Original strand, 34392476 - 34392570
Alignment:
| Q |
295 |
acctggaaattatcaaaggcacgagatggaatgttatcgtcaaattctttcatcatgtcccatggtccgtctccaacaccaaccaatatgattga |
389 |
Q |
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| T |
34392476 |
acctgaaaattatcaaatgctcgtgcaggaatgttatcgtcaaactgtttcatcatgtcccatggcccatctccaactccgactaatacgattga |
34392570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 324 - 396
Target Start/End: Complemental strand, 44131224 - 44131152
Alignment:
| Q |
324 |
aatgttatcgtcaaattctttcatcatgtcccatggtccgtctccaacaccaaccaatatgattgaaagagga |
396 |
Q |
| |
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| T |
44131224 |
aatgttatcatcaaagtgtttcatctcgtcccatggtccatctccaactccaaccaaaataattgagagagga |
44131152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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