View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2994-Insertion-6 (Length: 440)
Name: NF2994-Insertion-6
Description: NF2994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2994-Insertion-6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 17 - 359
Target Start/End: Original strand, 31131574 - 31131916
Alignment:
| Q |
17 |
gcaaattcatcgaaaaggtggtggatgttgaacttaacgatcgtctgcttcctattctccatgaagcctccaaaaaccaaatgattctccctgattttca |
116 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
31131574 |
gcaaattcatcgaaacggtggtggatgttgaacttaacgaccgtctccttcctattctccatgaagcctccaaaaactaaatgatcctccctgattttca |
31131673 |
T |
|
| Q |
117 |
agatattctccaacgttttacgtttgataatatttgcataattgcatttggattcgacccggagtatctcctcccttctcttcccgaaatcgcgtttgtg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
31131674 |
agatattctccaacgttttacgtttgataatatttgcataatcacatttggattcgatccggaatatctcatcccttctcttcccgaaatcgcgtttgtc |
31131773 |
T |
|
| Q |
217 |
aaagcttttgacgatagcacacgaatcagcggcgacaggataaacgctgctgttccatttttatggaaagtgaaaaaattcctaaacattggaaccaagc |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
31131774 |
aaagcttttgacgatagcacacgaatcagcggcgacaggataaacgctgatgttccatttttatggaaagtgaaaaaattcctaaacattggacccgagc |
31131873 |
T |
|
| Q |
317 |
gacggttgaaagaagctgtcgctgaagtaagggggctcgccac |
359 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31131874 |
gacggttgaaagaagctgtcgctgaagtaagggggctcgccac |
31131916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 7 - 359
Target Start/End: Original strand, 31126856 - 31127208
Alignment:
| Q |
7 |
aaatccctccgcaaattcatcgaaaaggtggtggatgttgaacttaacgatcgtctgcttcctattctccatgaagcctccaaaaaccaaatgattctcc |
106 |
Q |
| |
|
||||||||||| |||||| | |||| || || ||||||||||| |||||||| || ||||| |||||| ||||| || ||||| ||| |||||| |
|
|
| T |
31126856 |
aaatccctccgaaaattcgttgaaactgttgtcgatgttgaactcaacgatcgccttcttccaattctctctgaagtttcggaaaacaaaacaattctcg |
31126955 |
T |
|
| Q |
107 |
ctgattttcaagatattctccaacgttttacgtttgataatatttgcataattgcatttggattcgacccggagtatctcctcccttctcttcccgaaat |
206 |
Q |
| |
|
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
31126956 |
ctaattttcaagatattctccaacgtttcacgtttgataatatttgcataattgcgtttggatttgatccggagtatctcctcccttctcttcccgaaac |
31127055 |
T |
|
| Q |
207 |
cgcgtttgtgaaagcttttgacgatagcacacgaatcagcggcgacaggataaacgctgctgttccatttttatggaaagtgaaaaaattcctaaacatt |
306 |
Q |
| |
|
|||||||| ||||| ||||| |||||| ||||||||||| | || ||| |||| || || |||||||| ||||||||||||| ||| | |||| || |
|
|
| T |
31127056 |
agcgtttgttaaagcctttgatgatagctcacgaatcagcagtgagaggttaaatgcagcgattccatttctatggaaagtgaagaaaatattaaatgtt |
31127155 |
T |
|
| Q |
307 |
ggaaccaagcgacggttgaaagaagctgtcgctgaagtaagggggctcgccac |
359 |
Q |
| |
|
||| | |||||||||| |||||||||| ||||||||||| || |||||||| |
|
|
| T |
31127156 |
ggatcagagcgacggttaaaagaagctgctgctgaagtaagaggactcgccac |
31127208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 43 - 347
Target Start/End: Original strand, 31077574 - 31077878
Alignment:
| Q |
43 |
gttgaacttaacgatcgtctgcttcctattctccatgaagcctccaaaaaccaaatgattctccctgattttcaagatattctccaacgttttacgtttg |
142 |
Q |
| |
|
|||||||| || ||||||||||||||||||||| ||||| ||||||||||||| | |||| | ||||||||||||||| ||||||||||||||||| | |
|
|
| T |
31077574 |
gttgaactcaatgatcgtctgcttcctattctctccgaagcttccaaaaaccaaacggttctgcttgattttcaagatatcctccaacgttttacgttcg |
31077673 |
T |
|
| Q |
143 |
ataatatttgcataattgcatttggattcgacccggagtatctcctcccttctcttcccgaaatcgcgtttgtgaaagcttttgacgatagcacacgaat |
242 |
Q |
| |
|
||| ||| |||| ||| || ||||||||||| |||||||| | | ||||||||||| ||| | |||||| ||||| |||||||||||| ||| ||| |
|
|
| T |
31077674 |
atagtatctgcagaatcgcgtttggattcgatccggagtacttacattcttctcttcccaaaaccatgtttgtaaaagcctttgacgatagctcactaat |
31077773 |
T |
|
| Q |
243 |
cagcggcgacaggataaacgctgctgttccatttttatggaaagtgaaaaaattcctaaacattggaaccaagcgacggttgaaagaagctgtcgctgaa |
342 |
Q |
| |
|
||| | | || | |||||||| ||||||| ||||||||||||| ||| | ||||||| || | | ||||||| ||||||||||| ||||||||| |
|
|
| T |
31077774 |
tagcagtgtgagatttaacgctgcgattccattgatatggaaagtgaagaaaatattaaacatagggatcgagcgacgattgaaagaagccgtcgctgaa |
31077873 |
T |
|
| Q |
343 |
gtaag |
347 |
Q |
| |
|
||||| |
|
|
| T |
31077874 |
gtaag |
31077878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 404 - 440
Target Start/End: Original strand, 31131961 - 31131997
Alignment:
| Q |
404 |
ccttggaatcggtggatcttttgtcgcgatttttaag |
440 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
31131961 |
ccttggaatcggtggatattttgtcgcgatttttaag |
31131997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 359
Target Start/End: Original strand, 31128768 - 31128888
Alignment:
| Q |
239 |
gaatcagcggcgacaggataaacgctgctgttccatttttatggaaagtgaaaaaattcctaaacattggaaccaagcgacggttgaaagaagctgtcgc |
338 |
Q |
| |
|
|||||||| |||| ||| |||| | ||| |||||||| ||||||||||||| ||| | |||| ||||| ||||| |||| | |||||||| |||| |
|
|
| T |
31128768 |
gaatcagcagcgagaggttaaatgatgccattccatttctatggaaagtgaagaaaatattaaatgttggatccaagaaacggctaaaagaagccgtcgt |
31128867 |
T |
|
| Q |
339 |
tgaagtaagggggctcgccac |
359 |
Q |
| |
|
||||||||| || |||||||| |
|
|
| T |
31128868 |
tgaagtaagaggactcgccac |
31128888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 173
Target Start/End: Original strand, 38655083 - 38655148
Alignment:
| Q |
108 |
tgattttcaagatattctccaacgttttacgtttgataatatttgcataattgcatttggattcga |
173 |
Q |
| |
|
|||||| ||||| |||||||||||||| |||||||| ||||| |||| ||| || ||||| ||||| |
|
|
| T |
38655083 |
tgatttccaagacattctccaacgtttcacgtttgacaatatctgcaaaatcgcgtttggtttcga |
38655148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 18425 times since January 2019
Visitors: 3801