View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2994_high_15 (Length: 272)
Name: NF2994_high_15
Description: NF2994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2994_high_15 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 21 - 260
Target Start/End: Complemental strand, 19751470 - 19751232
Alignment:
| Q |
21 |
ttaaacctgcaaaactgtaactcggtattagttaacttgagcattaagctacactattactatagtgtatcgtacataaagtgagtaatctaaccatata |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
19751470 |
ttaaacctgcaaaactgtaactcggtattagttaacttgagcttta-gctacactattactatagtgtatggtacatagagtgagtaatctaaccatata |
19751372 |
T |
|
| Q |
121 |
gtagttagtgccagctgttaattggtaggaagatctaatagctagttagaacaatgacttctaaatatagatgaaatgtaacaaactcgacacaattcga |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
19751371 |
gtagttagtgccagctgttaattggtaggaagatctaatagctagttagaacaatgacttctatatatagatgaaatgtaacaaactcgacacaattcga |
19751272 |
T |
|
| Q |
221 |
taaacagttttcattatctcagatttcttcttcttcccta |
260 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
19751271 |
taaacagttttcattttctcagatttcttcttcttcccta |
19751232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 138 - 254
Target Start/End: Complemental strand, 1820390 - 1820277
Alignment:
| Q |
138 |
ttaattggtaggaagatctaatagctagttagaacaatgacttctaaatatagatgaaatgtaacaaactcgacacaattcgataaacagttttcattat |
237 |
Q |
| |
|
||||||||| ||||||||||| | |||||||||| || ||||| |||||||| || ||||||||||| ||||||||||||||||| |||| ||| | |
|
|
| T |
1820390 |
ttaattggttggaagatctaa--gttagttagaactataggttctatatatagatcaaccgtaacaaactcaacacaattcgataaaca-ttttaatttt |
1820294 |
T |
|
| Q |
238 |
ctcagatttcttcttct |
254 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
1820293 |
ctgagatttcttcttct |
1820277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 18867 times since January 2019
Visitors: 3804