View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2994_high_16 (Length: 271)
Name: NF2994_high_16
Description: NF2994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2994_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 20 - 262
Target Start/End: Complemental strand, 5075701 - 5075459
Alignment:
| Q |
20 |
agcaaacccctctatggactgctcaaacaaagggaatgttggcatatggagaattagaacctcaaacctaaagaggagcaaacacctagatctcaagctt |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
5075701 |
agcaaacccctctatggactgctcaaacaaagggaatgttggcatatggagaattagaacctcaaacctaaagaggagcaaacacctaggtctcaagctt |
5075602 |
T |
|
| Q |
120 |
acaccaccaggtcaacccaacccatgcgggttacaaaccctaaatacttaattttgattcataatcccattaaatgcatcattagccctgacagtacaaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5075601 |
acaccaccaggtcaacccaacccatgcgggttacaaaccctaaatacttaattttgattcataatcccattaaatgcatcattagccctgacagtacaaa |
5075502 |
T |
|
| Q |
220 |
attcacaccgccattcaatacactcaccaacagagacctatga |
262 |
Q |
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| T |
5075501 |
attcacaccgccattcaatacactcaccaacagagacctatga |
5075459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 222
Target Start/End: Original strand, 27583930 - 27584000
Alignment:
| Q |
152 |
acaaaccctaaatacttaattttgattcataatcccattaaatgcatcattagccctgacagtacaaaatt |
222 |
Q |
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|||||||||||||| |||||| |||||| ||| ||||||||||||| ||||| |||||||| || ||||| |
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| T |
27583930 |
acaaaccctaaatagttaattaagattcaaaattccattaaatgcatgattaggcctgacagcaccaaatt |
27584000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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