View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2994_high_20 (Length: 255)
Name: NF2994_high_20
Description: NF2994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2994_high_20 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 17 - 255
Target Start/End: Original strand, 49861344 - 49861574
Alignment:
| Q |
17 |
atgaacctctgttcccaaaacctagtaaaaaggattaagaaactgatgaaagtacagtaacaacagaagcttcagcttcacaaataaataaataaaccga |
116 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
49861344 |
atgatcctctgttcccaaaaccttgtaaaaaggattaagaaactgatgaaagtacagtaaca---gtagcttcagcttcacaaataaataaataaaccga |
49861440 |
T |
|
| Q |
117 |
aacctactcactccaaccaaccaaaccaaaccaataatcgaagtaaccttcccattctcaattccaacaacattttactgtgccattcatttattctact |
216 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49861441 |
aacctactcactccaaccaacc-----aaaccaataatcgaagtaaccttcccattctcaattccaacaacattttactgtgccattcatttattctact |
49861535 |
T |
|
| Q |
217 |
cagatgaattcgaacatggataatgaaagagaaatcgaa |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49861536 |
cagatgaattcgaacatggataatgaaagagaaatcgaa |
49861574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 18429 times since January 2019
Visitors: 3801