View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2994_low_10 (Length: 443)
Name: NF2994_low_10
Description: NF2994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2994_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 8 - 425
Target Start/End: Original strand, 39834490 - 39834902
Alignment:
| Q |
8 |
gagcacagaagaagtggatcatgttaatacaattataaaatgacttaagtgggcttcatggttaactaaaggtgttaattgctatcttaagatttaaata |
107 |
Q |
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| T |
39834490 |
gagcacagaagaagtggatcgtgttaatacaattataaaatgacttaagtgggcttcatggttaactaaaggtgttaattgctatcttaagatttaaata |
39834589 |
T |
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| Q |
108 |
aatcatcaattaatattattgatgctaagatgacaagtcagctttgattccttgagtgggaggggaggagtggcattgcaggctcggatatactatgttg |
207 |
Q |
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| T |
39834590 |
aatcatcaactaatattattgatgctaagatgacaagtcagctttgattccttgagtgggaggggaggagtggcattgcaggctcggatatactatgttg |
39834689 |
T |
|
| Q |
208 |
cttgctgtttattgaattgtttgcgatataacattattccctcttctatgc-ttggtttaaaaaagatgatgtagtgtgaaactttaacacttatactaa |
306 |
Q |
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| T |
39834690 |
cttgctgtttattgaattgtttgcgatataacattattccctcttctatgctttcgtttaaaaaagatgatatagtgtgaaactttaacacttatactaa |
39834789 |
T |
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| Q |
307 |
ctaaactaatgtattttgcatgatgc-nnnnnnntaggtacattcacatttcacatgttatactatctttatgaccatcaaattctaattagtaatttag |
405 |
Q |
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| T |
39834790 |
ctaaactaatgtattttgcatgatgcaaaaaaaataggtaca-------ttcacctgttatactatctttatgaccatcaaattctaattagtaatttag |
39834882 |
T |
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| Q |
406 |
gtacattcacatgcaaggcg |
425 |
Q |
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| T |
39834883 |
gtacattcacatgcaaggcg |
39834902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 29 - 155
Target Start/End: Original strand, 39824186 - 39824314
Alignment:
| Q |
29 |
tgttaatacaattataaaatgacttaagtgggcttcat---ggttaactaaaggtgttaattgctatcttaagatttaaataaatcatcaattaatatta |
125 |
Q |
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| T |
39824186 |
tgttaatacaattataaaatgactgaagtgggcttcatcatggttaattaaaggtgctaattgctatcccaacatt-atagaaatcattaattaatatta |
39824284 |
T |
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| Q |
126 |
ttgatgctaagatgacaagtcagctttgat |
155 |
Q |
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| T |
39824285 |
ttgatgctaagatgacaagtcagctttgat |
39824314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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