View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2994_low_11 (Length: 432)
Name: NF2994_low_11
Description: NF2994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2994_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Original strand, 50897644 - 50898057
Alignment:
| Q |
1 |
aactctatttagattgtgcagcggatagtgtgtagagaaaattagagaattacatatttaatattaaaacacttaactaaatagttgtgtatatccacgg |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
50897644 |
aactctatttagattgtgcagctgatagtgtgtagagaaaattagagaattacatatttaatcttaaaacacttaactaaatagttgtgtatatccacgg |
50897743 |
T |
|
| Q |
101 |
tagccttcgaacattcgttaaggtcactgtaacaggccaatcaatggtggtagcttaactcctagtctcctctaatgagattgagcagccaccgaacaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
50897744 |
tagccttcgaacattcgttaaggtcactgtagcaggccaatcaatggtggtagcttaactcctagtctcctctaatgagattgagcagccacctaacaaa |
50897843 |
T |
|
| Q |
201 |
attgaagatgttggaagttttatatccaaaagttattcattgtttgtgcaaccaaggtgaataagccaagaatttgagttctaaggtgaataaatgagga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50897844 |
attgaagatgttggaagttttatatccaaaagttattcattgtttgtgcaaccaaggtgaataagccaagaatttgagttctaaggtgaataaatgagga |
50897943 |
T |
|
| Q |
301 |
atttaagttcgaatactaacccttgtagtatgtagacgtaatacaatgttcttgtcggttgaactatgtttacatgactctattgattatgttatgttta |
400 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50897944 |
atttaagttcgaatactaacccttgtagtatgtagacgtaatacaatgttcttgtcggttgaactatgtttacatgactctattgattatgttatgttta |
50898043 |
T |
|
| Q |
401 |
catgattcttttga |
414 |
Q |
| |
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|||||||||||||| |
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|
| T |
50898044 |
catgattcttttga |
50898057 |
T |
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