View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2994_low_12 (Length: 397)
Name: NF2994_low_12
Description: NF2994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2994_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 103 - 380
Target Start/End: Complemental strand, 34957867 - 34957590
Alignment:
| Q |
103 |
caaaccagagtgattgcatgtacagagaacacactaatgtaatatggtttggtgacacacaatctttaagcatttgatttgaccgtgccattcataagca |
202 |
Q |
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| T |
34957867 |
caaactagcgtgattgcatgtacagagaacacactaatgtaatatggtttggtgacacgcaatctttaagcatttgatttgaccgtgccattcataagca |
34957768 |
T |
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| Q |
203 |
cgaccgtgcgcatgaaattaggcattatttccccagaattacagtaagttaccgcacggtcgtgccaaaataccgcacagtcgtgcgtctgtccagacca |
302 |
Q |
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| T |
34957767 |
cgaccgtgcgcatgaaattaggcattatttccccagaattacagtaagttatcgcacggccgtgccaaaataccgcacggtcgtgcgtctgtccagacca |
34957668 |
T |
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| Q |
303 |
atatttcttcctgagctaccactgaggagtatactgagttgtatcataatgtattaaaaacagcaaacacgaaagaga |
380 |
Q |
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| T |
34957667 |
atatttcttcctgagctaccactgagaagtatactgagttgtatcataatgtattaaaagcagcaaacacgaaagaga |
34957590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 14 - 81
Target Start/End: Complemental strand, 34957931 - 34957864
Alignment:
| Q |
14 |
atatcaatcatgcaagcatagtgctcttgtgttggtttgattccaaacttttcccccattgtttcaaa |
81 |
Q |
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| T |
34957931 |
atatcaatcatgcaagcatagtgctcttgtgttggtttgattccaaacttttcctccattgtttcaaa |
34957864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 133; Significance: 5e-69; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 16 - 181
Target Start/End: Original strand, 50131707 - 50131874
Alignment:
| Q |
16 |
atcaatcatgcaagcatagtgctcttgtgttggtttgattccaaacttttcccccattgtttcaaaatattgtttcccctcatttaccaaaccagagtga |
115 |
Q |
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| T |
50131707 |
atcaatcatgcaagcatggtgctcttgtgttggtttgattccaaacttttcctccattgtttcaaaatattgtttcccctcatttaccaaaccagcatga |
50131806 |
T |
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| Q |
116 |
ttgcatgtacagagaacac--actaatgtaatatggtttggtgacacacaatctttaagcatttgatt |
181 |
Q |
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|| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50131807 |
ttacatgcacagagaacactgactaatgtaatatggtttggtgacacacaatctttaagcatttgatt |
50131874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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