View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2994_low_13 (Length: 365)
Name: NF2994_low_13
Description: NF2994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2994_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 34579919 - 34579572
Alignment:
| Q |
1 |
tgaatgtgtagaggcttaagctagttgcatgctcatcagtattcaatcatttgacttatttgttgcaattcatatatatctcattaagtgcaggtggact |
100 |
Q |
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| T |
34579919 |
tgaatgtgtagaagcttaagctagttgcatgctcatcagtattcaatcatttgacttatttgttgcaattcatatatatctcattaagtgcaggtggact |
34579820 |
T |
|
| Q |
101 |
tacaatttttcaaataatacaagaaacattatctacaactatatagttacataatacacaccatacttctataaccataaggttataaaagtaatgaatt |
200 |
Q |
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| T |
34579819 |
tacaatttttcaaataatacaagaaacattatctacaactatatagttacataatacacaccatacttctataaccataaggttataaaagtaatgaatt |
34579720 |
T |
|
| Q |
201 |
tcatgagttccaatgtaatgaagcatgactatgactatgcaacaacgattatagctgagtttctgattgatattattgcttggttggcatatagctggac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
34579719 |
tcatgagttccaatgtaatgaagcatgactatgactatgcaacaacgattatagctgagtttgtgattgatattattgcttggttggcatatagctggac |
34579620 |
T |
|
| Q |
301 |
ttgaaactattttagaaggaggaagaagaattaatactagtacatatc |
348 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34579619 |
ttgaaactattttagaaggaggaagaagaattaatactagtacatatc |
34579572 |
T |
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