View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2994_low_15 (Length: 314)
Name: NF2994_low_15
Description: NF2994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2994_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 19 - 297
Target Start/End: Original strand, 38082069 - 38082347
Alignment:
| Q |
19 |
gacggtgtttacagttccaagagcattggaacaaaatgcaacaaagcttgttcacaagtggcagtatttggcaagtaaaattgatgaaaacatagccatc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38082069 |
gacggtgtttacagttccaagagcattggaacaaaatgcaacaaagcttgttcacaagtggcagtatttggcaagtaaaattgatgaaaacatagccatc |
38082168 |
T |
|
| Q |
119 |
aatattgtctttcaaaggataaattcaagtaaaaaaggcgagacaacaattctagctatatttcaagccttgtttcttggaggtgtagataaactcattc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38082169 |
aatattgtctttcaaaggataaattcaagtaaaaaaggcgagacaacaattctagctatatttcaagccttgtttcttggaggtgtagataaactcattc |
38082268 |
T |
|
| Q |
219 |
ccttgatggaacaaaagtttcctgagttgggtgtggtcagagaaaattgtattgaaatgagttggattgaatcggttct |
297 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38082269 |
ccttgatggatcaaaagtttcctgagttgggtgtggtcagagaaaattgtattgaaatgagttggattgaatcggttct |
38082347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 42 - 297
Target Start/End: Complemental strand, 38061775 - 38061514
Alignment:
| Q |
42 |
cattggaacaaaatgcaacaaagcttgttcacaagtggcagtatttggcaagtaaaattgatgaaaacatagccatcaatattgtctttcaaaggataaa |
141 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||| | || |||||| ||||||||||||||||||||| || || |||| |||||| |||| |
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| T |
38061775 |
cattggatcaaaatgcaacaaagcttgttcacaagtggcagtttgtgacaagtacaattgatgaaaacatagccatttatgttatcttgcaaagggtaaa |
38061676 |
T |
|
| Q |
142 |
ttcaagtaaaaaaggcgagacaa------caattctagctatatttcaagccttgtttcttggaggtgtagataaactcattcccttgatggaacaaaag |
235 |
Q |
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|| |||||||||||| || ||| || | | |||| ||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||| |
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| T |
38061675 |
tttaagtaaaaaaggtaagtcaaattcaacagtacaagctttatttcaagccttgtttcttggaagtgtagataaactcattcccttgatgaaagaaaag |
38061576 |
T |
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| Q |
236 |
tttcctgagttgggtgtggtcagagaaaattgtattgaaatgagttggattgaatcggttct |
297 |
Q |
| |
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||||| || | ||| |||| |||||| |||||||||| ||||||||||||||||||||||| |
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| T |
38061575 |
tttccagaacttggtttggttagagaagattgtattgagatgagttggattgaatcggttct |
38061514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 23 - 297
Target Start/End: Original strand, 38086498 - 38086784
Alignment:
| Q |
23 |
gtgtttacagttccaagagcattggaacaaaatgcaacaaagcttgttcacaagtggcagtatttggcaagtaaaattgatgaaaacatagccatcaata |
122 |
Q |
| |
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|||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||| |||||||| |||| |
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| T |
38086498 |
gtgtttactgttccaaaaacattggaacaaaatgcaacaaagcttgttcacaagtggcaatttttggcaagtaaacttgatgaaaatatagccatgaata |
38086597 |
T |
|
| Q |
123 |
ttgtctttcaaagg------ataaattcaagtaaaaaaggcgagacaa------caattctagctatatttcaagccttgtttcttggaggtgtagataa |
210 |
Q |
| |
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|||||| |||||| ||||||||||||||||||| ||| ||| | | |||| | |||||||||| ||||||||||||||||||||||| |
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| T |
38086598 |
ttgtctggcaaagggtaaatttaaattcaagtaaaaaaggtgagtcaaagtcaccggtactagttttatttcaagctttgtttcttggaggtgtagataa |
38086697 |
T |
|
| Q |
211 |
actcattcccttgatggaacaaaagtttcctgagttgggtgtggtcagagaaaattgtattgaaatgagttggattgaatcggttct |
297 |
Q |
| |
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|||||| |||||| | || | |||||||||||| | ||| |||| |||||| |||||||||||||||||||||||||||| ||||| |
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| T |
38086698 |
actcatacccttggttcaagagaagtttcctgagcttggtttggttagagaatattgtattgaaatgagttggattgaatctgttct |
38086784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 20 - 297
Target Start/End: Original strand, 38072985 - 38073274
Alignment:
| Q |
20 |
acggtgtttacagttccaagagcattggaacaaaatgcaacaaagcttgttcacaagtggcagtatttggcaagtaaaattgatgaaaacatagccatca |
119 |
Q |
| |
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||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| | | || |||| |||| |||||| ||||||| | |
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| T |
38072985 |
acggtgtttactgttccaagaacattggaacaaaatgcaacaaagcttgttcacaagtggcagtttgtagctcataaacttgaagaaaacttagccatta |
38073084 |
T |
|
| Q |
120 |
atattgtctttcaaaggata------aattcaagtaaaaaaggcgagacaa------caattctagctatatttcaagccttgtttcttggaggtgtaga |
207 |
Q |
| |
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||||| |||| |||||| || |||||||||||| |||| ||| ||| || | |||||| |||||||| |||||||||| ||| ||||||| |
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| T |
38073085 |
atattatcttgcaaaggctagatttaaattcaagtaaacaaggtgagccaaagtcaacagtactagctttatttcaatccttgtttctaggaagtgtaga |
38073184 |
T |
|
| Q |
208 |
taaactcattcccttgatggaacaaaagtttcctgagttgggtgtggtcagagaaaattgtattgaaatgagttggattgaatcggttct |
297 |
Q |
| |
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||| ||| | |||||||||||| ||||||||||||| | ||| |||| |||||| ||||| |||||||||||||||||||||| ||||| |
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| T |
38073185 |
taacctcttacccttgatggaagaaaagtttcctgaacttggtttggttagagaagattgtgttgaaatgagttggattgaatcagttct |
38073274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 32 - 297
Target Start/End: Original strand, 38058669 - 38058940
Alignment:
| Q |
32 |
gttccaagagcattggaacaaaatgcaacaaagcttgttcacaagtggcagtatttggcaagtaaaattgatgaaaacatagccatcaatattgtctttc |
131 |
Q |
| |
|
||||||| | |||||||||| ||||||||||||||| ||||||||||||||| |||| |||||| ||||||||||||| ||| || | | || |||| | |
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| T |
38058669 |
gttccaaaaacattggaacacaatgcaacaaagcttattcacaagtggcagtttttgacaagtagaattgatgaaaacttagaaattactgttatcttac |
38058768 |
T |
|
| Q |
132 |
aaaggataaattcaagtaaaaaaggcgagacaa------caattctagctatatttcaagccttgtttcttggaggtgtagataaactcattcccttgat |
225 |
Q |
| |
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||||| |||||||||||| ||| || || ||| || | | |||||||||||||||||||||||||||||| |||||||| ||||| | |||||| |
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| T |
38058769 |
aaagggtaaattcaagtataaaggggaagtcaaaatcaacagtacaagctatatttcaagccttgtttcttggaggagtagataagctcatacacttgat |
38058868 |
T |
|
| Q |
226 |
ggaacaaaagtttcctgagttgggtgtggtcagagaaaattgtattgaaatgagttggattgaatcggttct |
297 |
Q |
| |
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| || | |||||||||||| | ||| |||| |||||| ||||| |||| ||||||||| ||||||| ||||| |
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| T |
38058869 |
gcaagagaagtttcctgagcttggtttggttagagaagattgtgttgagatgagttgggttgaatcagttct |
38058940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 186 - 291
Target Start/End: Original strand, 37954488 - 37954593
Alignment:
| Q |
186 |
ccttgtttcttggaggtgtagataaactcattcccttgatggaacaaaagtttcctgagttgggtgtggtcagagaaaattgtattgaaatgagttggat |
285 |
Q |
| |
|
||||||||||||||||||||||| ||| || |||||||||||| | ||||||| ||| | ||| |||| |||||| |||||| ||| ||||||||||| |
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|
| T |
37954488 |
ccttgtttcttggaggtgtagatggacttatccccttgatggaagaggagtttccagagcttggtttggttagagaagattgtactgagatgagttggat |
37954587 |
T |
|
| Q |
286 |
tgaatc |
291 |
Q |
| |
|
|||||| |
|
|
| T |
37954588 |
tgaatc |
37954593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 262
Target Start/End: Original strand, 38078009 - 38078102
Alignment:
| Q |
170 |
ctagctatatttcaagccttgtttctt-ggaggtgtagataaactcattcccttgatggaacaaaagtttcctgagttgggtgtggtcagagaa |
262 |
Q |
| |
|
|||||| ||||| ||||||||||| || |||||||||||| ||||||| ||||||||| || | |||||||||||| | ||| |||| |||||| |
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|
| T |
38078009 |
ctagctttattttaagccttgtttttttggaggtgtagatgaactcatgcccttgatgcaagagaagtttcctgagcttggtttggttagagaa |
38078102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 42 - 154
Target Start/End: Original strand, 10792940 - 10793055
Alignment:
| Q |
42 |
cattggaacaaaatgcaacaaagcttgttcacaagtggcagtatttggcaagtaaaattgatgaaaacatagccatca---atattgtctttcaaaggat |
138 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||| |||||| | || |||||| |||||||| |||||||||||| | || || |||| | |||| | |
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|
| T |
10792940 |
cattggatcaaaatgcaacaaaacttgttcacaattggcagcttgtgacaagtataattgatgcaaacatagccattaattatgttatcttgctaagggt |
10793039 |
T |
|
| Q |
139 |
aaattcaagtaaaaaa |
154 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
10793040 |
aaattcaagtaaaaaa |
10793055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 42 - 154
Target Start/End: Complemental strand, 34268695 - 34268580
Alignment:
| Q |
42 |
cattggaacaaaatgcaacaaagcttgttcacaagtggcagtatttggcaagtaaaattgatgaaaacatagccatca---atattgtctttcaaaggat |
138 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||| |||||| | || |||||| |||||||| |||||||||||| | || || |||| | |||| | |
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|
| T |
34268695 |
cattggatcaaaatgcaacaaaacttgttcacaattggcagcttgtgacaagtataattgatgcaaacatagccattaattatgttatcttgctaagggt |
34268596 |
T |
|
| Q |
139 |
aaattcaagtaaaaaa |
154 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
34268595 |
aaattcaagtaaaaaa |
34268580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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