View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2994_low_16 (Length: 305)
Name: NF2994_low_16
Description: NF2994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2994_low_16 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 5075086 - 5075390
Alignment:
| Q |
1 |
aagaagaagcggaagcgtgataggtctgatgagaaaagtggatttggttcgaggaaatcgcgtgttcgggcctgggctgattctgaggctaatacagtta |
100 |
Q |
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| T |
5075086 |
aagaagaagcggaagcgtgataggtctgatgagaaaagtggatttggttcgaggaaatcgcgtgttcgggcctgggctgattctgaggctaatacagtta |
5075185 |
T |
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| Q |
101 |
aagattatttcattgattctcatggtgatcgtgataatcttgcgtttgggtgtatctataggtaaattggatgaaaaaattgatttgttcattttaaatt |
200 |
Q |
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| T |
5075186 |
aagattatttcattgattctcatggtgatcgtgataatcttgcgtttgggtgtatctataggtaaattggatgaaaaaattgatttgttcattttaaatt |
5075285 |
T |
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| Q |
201 |
gcaaggggttttgtttaaattttaaattatttgtgtttctatctatgtagcatcgacacttct-atagaagcttgtatttgacacatgtgattacattca |
299 |
Q |
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| T |
5075286 |
gcaagtggttttgtttaaa-tttgaattatttgtgtttctatctatgtagcatcgacacttctgatagaagcgtgtatttgacacatgtgattacattca |
5075384 |
T |
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| Q |
300 |
attatg |
305 |
Q |
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|||||| |
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| T |
5075385 |
attatg |
5075390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 304
Target Start/End: Original strand, 51383991 - 51384019
Alignment:
| Q |
276 |
atttgacacatgtgattacattcaattat |
304 |
Q |
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| T |
51383991 |
atttgacacatgtgattacattcaattat |
51384019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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