View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2994_low_18 (Length: 273)
Name: NF2994_low_18
Description: NF2994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2994_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 7e-95; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 37 - 243
Target Start/End: Complemental strand, 31214084 - 31213874
Alignment:
| Q |
37 |
aacacaccgtgataatgagatcttgattttttgtagtactaatatatttcttccaaatattgtttttcagcaaa-----ggagtgttctatttagttaca |
131 |
Q |
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| T |
31214084 |
aacacaccatgataatgagatcttgattttttgtagtactaatatatttcttccaaatattgtttttcagcaaattaaaggagtgttctatttagttaca |
31213985 |
T |
|
| Q |
132 |
taaacttattataatttttaacaatttgcagttttccagtacaaccccacaaacttataatcacaatgaggatatgagaagaaggggtttcaaccccaca |
231 |
Q |
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| T |
31213984 |
taaa-ttattataatttttaacaatttgcagttttccagtacaaccccacaaacttataatcacaatgaggatatgagaagaaggggtttcaaccccaca |
31213886 |
T |
|
| Q |
232 |
agactgagagag |
243 |
Q |
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|||| ||||||| |
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| T |
31213885 |
agacagagagag |
31213874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 37 - 244
Target Start/End: Complemental strand, 31201545 - 31201329
Alignment:
| Q |
37 |
aacacaccgtgataatgagatcttgattttttgtagtactaatatatttcttccaaatattgtttttcagcaaaggagtgttctatttagttacataaac |
136 |
Q |
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|||||||| |||||||||||||||| |||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
31201545 |
aacacaccatgataatgagatcttggttttttt--gtagtaatatagttcttccaaatattgtttttcagcaaaggagtgttctatttagttacatgaac |
31201448 |
T |
|
| Q |
137 |
ttattataattttt-aacaatttgcagttttccagtacaacc----------ccacaaacttataatcacaatgaggatatgagaagaaggggtttcaac |
225 |
Q |
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|||||||||||||| ||||||||||||||||||| ||||||| | |||||||||||||||||||||||| |||||||||||||| | |||| |
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| T |
31201447 |
ttattataatttttgaacaatttgcagttttccattacaaccacatagaagacaacaaacttataatcacaatgaggacatgagaagaaggggctacaac |
31201348 |
T |
|
| Q |
226 |
cccacaagactgagagaga |
244 |
Q |
| |
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||||||||| | ||||||| |
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| T |
31201347 |
cccacaagaatcagagaga |
31201329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 37 - 236
Target Start/End: Complemental strand, 13605671 - 13605464
Alignment:
| Q |
37 |
aacacaccgtgataatgagatcttgattttttgtagtactaatatatttcttccaaatattgtttttcagcaaaggagtgttctatttagttacataaac |
136 |
Q |
| |
|
|||||||| |||||||||||||| |||||||| ||||| |||| ||| ||||||||||||||||||||||||||| |||||||||| |||||| ||| |
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| T |
13605671 |
aacacaccatgataatgagatctcgattttttatagta---atatcgttcctccaaatattgtttttcagcaaaggagcgttctatttaattacatgaac |
13605575 |
T |
|
| Q |
137 |
ttattataattttt-aacaatttgcagttttccagtacaacc----------ccacaaacttataatcacaatgaggatatgagaagaaggggtttcaac |
225 |
Q |
| |
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|||||||||||||| || |||||||||||||||| ||||||| | |||||||||||||||||||||| | ||||||||||||| ||||||| |
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|
| T |
13605574 |
ttattataatttttgaataatttgcagttttccattacaaccacatagaagacaacaaacttataatcacaatgagaacatgagaagaagggctttcaac |
13605475 |
T |
|
| Q |
226 |
cccacaagact |
236 |
Q |
| |
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||||||||||| |
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|
| T |
13605474 |
cccacaagact |
13605464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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