View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2994_low_2 (Length: 1223)

Name: NF2994_low_2
Description: NF2994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2994_low_2
NF2994_low_2
[»] chr4 (18 HSPs)
chr4 (20-907)||(38412159-38413048)
chr4 (914-1213)||(38411744-38412043)
chr4 (918-1100)||(55606235-55606416)
chr4 (185-595)||(38422420-38422804)
chr4 (918-1096)||(28146982-28147159)
chr4 (918-1099)||(25967999-25968179)
chr4 (20-97)||(38422858-38422935)
chr4 (918-1091)||(13198078-13198250)
chr4 (918-1000)||(11440588-11440670)
chr4 (1023-1149)||(11440668-11440797)
chr4 (739-811)||(38407541-38407613)
chr4 (839-909)||(25967801-25967872)
chr4 (168-230)||(38407731-38407791)
chr4 (609-701)||(38422270-38422357)
chr4 (662-720)||(38407632-38407688)
chr4 (839-909)||(28146787-28146858)
chr4 (1057-1100)||(29866160-29866203)
chr4 (953-1053)||(46308387-46308487)
[»] chr7 (11 HSPs)
chr7 (913-1099)||(25635893-25636079)
chr7 (919-1104)||(39653441-39653626)
chr7 (918-1103)||(47363689-47363874)
chr7 (918-1026)||(10493472-10493579)
chr7 (1023-1082)||(10493376-10493435)
chr7 (918-1104)||(33049115-33049311)
chr7 (1014-1099)||(7493053-7493138)
chr7 (842-909)||(47363963-47364030)
chr7 (946-1011)||(45435419-45435484)
chr7 (989-1082)||(31742958-31743052)
chr7 (1000-1098)||(45435503-45435603)
[»] chr2 (9 HSPs)
chr2 (918-1100)||(37794640-37794821)
chr2 (918-1099)||(17988977-17989157)
chr2 (981-1178)||(5430210-5430407)
chr2 (1008-1098)||(19263821-19263911)
chr2 (1024-1096)||(35016316-35016388)
chr2 (928-1013)||(35016457-35016541)
chr2 (919-977)||(5428641-5428699)
chr2 (919-971)||(19263772-19263824)
chr2 (1058-1100)||(20929880-20929922)
[»] chr3 (4 HSPs)
chr3 (918-1099)||(11783396-11783577)
chr3 (918-1079)||(7299106-7299267)
chr3 (838-907)||(7298925-7298994)
chr3 (1045-1082)||(53527191-53527228)
[»] chr1 (12 HSPs)
chr1 (945-1099)||(12990541-12990694)
chr1 (919-1105)||(34664779-34664964)
chr1 (913-1099)||(32617560-32617744)
chr1 (918-1099)||(9457617-9457794)
chr1 (918-1099)||(9461714-9461891)
chr1 (918-1093)||(14081707-14081872)
chr1 (838-909)||(32617859-32617931)
chr1 (839-909)||(9457446-9457517)
chr1 (839-909)||(9461543-9461614)
chr1 (840-909)||(12990144-12990214)
chr1 (918-997)||(24699887-24699966)
chr1 (1064-1101)||(963102-963139)
[»] chr8 (8 HSPs)
chr8 (918-1096)||(23489962-23490139)
chr8 (1010-1099)||(13402173-13402262)
chr8 (1023-1104)||(13396888-13396969)
chr8 (918-1096)||(7154249-7154439)
chr8 (1041-1092)||(14370805-14370856)
chr8 (918-976)||(14867365-14867423)
chr8 (839-896)||(14867560-14867618)
chr8 (841-906)||(23490243-23490309)
[»] chr5 (11 HSPs)
chr5 (920-1093)||(41283493-41283664)
chr5 (918-1092)||(39426087-39426260)
chr5 (918-1092)||(22927061-22927236)
chr5 (918-1099)||(36491494-36491666)
chr5 (918-1092)||(13424636-13424806)
chr5 (839-905)||(13424887-13424954)
chr5 (839-909)||(19967312-19967383)
chr5 (918-977)||(16341523-16341584)
chr5 (1060-1182)||(19967627-19967749)
chr5 (1057-1100)||(37247652-37247695)
chr5 (839-909)||(41283294-41283365)
[»] chr6 (7 HSPs)
chr6 (918-1087)||(9177588-9177760)
chr6 (979-1098)||(26660607-26660726)
chr6 (979-1098)||(26766578-26766697)
chr6 (918-1000)||(32296363-32296445)
chr6 (935-1011)||(10117185-10117259)
chr6 (839-909)||(8169240-8169310)
chr6 (1057-1104)||(9771928-9771975)
[»] scaffold0989 (1 HSPs)
scaffold0989 (841-887)||(2119-2165)


Alignment Details
Target: chr4 (Bit Score: 746; Significance: 0; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 746; E-Value: 0
Query Start/End: Original strand, 20 - 907
Target Start/End: Complemental strand, 38413048 - 38412159
Alignment:
Q  20 gtctctgcctttgaggctgttgttcttgttctcaccctctgcttcttttacctttgttgtggttgcagcttctgattttcacctttctctctctcatata 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |    
T  38413048 gtctctgcctttgaggctgttgttcttgttctcaccctctgcttcttttacctttgttgtggttgcagcttctgattttcacctttctctctctctctca 38412949  T
Q  120 ta-ataatgtaagggtaatgtactatttttctaacttcctactcaatgcaatcaatgctttttagcttttgtaatttcaattatatgttcattcaaaact 218  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38412948 tatataatgtaagggtaatgtactatttttctaacttcctactcaatgcaatcaatgctttttagcttttgtaatttcaattatatgttcattcaaaact 38412849  T
Q  219 gctttagtatttctagtttcttatcctaagtttggattaatcacatatatttaagggtgcaaaactaaagaaaattagttgatcatcaaattttttgaat 318  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38412848 gctttagtatttctagtttcttatcctaagtttgtattaatcacatatatttaagggtgcaaaactaaagaaaattagttgatcatcaaattttttgaat 38412749  T
Q  319 caa-gaggatgagttttggatgaattat-----taccttctctcactcccaacataattcaaagtaattttattttattagataagtgccctacctaatg 412  Q
    ||| ||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38412748 caaagaggatgagttttggatgaattatattattaccttctctcactcccaacataattcaaagtaattttattttattagataagtgccctacctaatg 38412649  T
Q  413 gccatatggtggaaacacgatataaaatgtcttcatacaaaactactagactgtaacaacgaggacaattcttgatatataacaaacttgaaaatgatat 512  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  38412648 gccatatggtggaaacacgatataaaatgtcttcatacaaaactactagactgtaacaacgaggacaattcttgatatatgacaaacttgaaaatgatat 38412549  T
Q  513 tttccattgaaagagtttaacatttgttatgtgaagcaacaaaatatccattatgtgatataaaacacatgacaattatcatattaaccaaccaatatcc 612  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  38412548 tttccattgaaagagtttaacatttgttatgtgaagcaacaaaatatccattatgtgatataaaacacatgacaattatcatattaaccaaccaatatct 38412449  T
Q  613 acaatcataccaaccattgacattagtagatcttactcaatacaacattgtcccaagtgagtgttcattgcaaacatttttgtttgaaatgattaattct 712  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||    
T  38412448 acaatcattccaaccattgacattagtagatcttactcaagacaacattgt-ccaagtgagtgttcattgcaaacatttttgtttgaaa-gattaatgct 38412351  T
Q  713 tcaagattnnnnnnnnnnnnnnnnttattgaaagatattttttaatggcgatatccaccgaaagattaatgctgatttgtgaatcacatttagtttgctc 812  Q
    ||||||||                |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38412350 tcaagatt---aaaaaaaataaaattattgaaagatcttttttaatggcgatatccaccgaaagattaatgctgatttgtgaatcacatttagtttgctc 38412254  T
Q  813 tactatatcgttgatactagtcttagaggttttaaaaaatggtccattaccgagaaaaaggcggcgacaaaaagtataggtagccgacgttaccg 907  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38412253 tactatatcgttgatactagtcttagaggttttaaaaaatggtccattaccgagaaaaaggcggcgacaaaaagtataggtagccgacgttaccg 38412159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 914 - 1213
Target Start/End: Complemental strand, 38412043 - 38411744
Alignment:
Q  914 tatcttttcaattaagatagatgaaaatcatatttttactacatacttgattataaattacatactgttatttccttatctagtttagaacttcaaatct 1013  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  38412043 tatcttttcaattaagatagatgaaaatcatatttttactacatacttgattataaattacataatgttatttccttatctagtttagaactccaaatct 38411944  T
Q  1014 atctctaggttaagttatttacattcctatcattatttaaaagttgtgcaatgttgtgattaattcacagcgcgacaaccgcaatctataatacaatata 1113  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  38411943 atctctaggttaagttatttacattcctatcattgtttaaaagttgtgcaatgttgtgattaattcacagcgcgacaaccgcaatctataatacaatatc 38411844  T
Q  1114 tgtaacggccgaaatggtgaaatcatatacacgacctggaccttgaccgcgaccgttgtttaaaacctttcggctgctaaaaatgtttttgtgatgatgt 1213  Q
    |||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  38411843 tgtaacagccgaaatggtgaaatcatatacatgacctggaccttgaacgcgaccgttgtttaaaacctttcggctgctaaaaatatttttgtgatgatgt 38411744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 918 - 1100
Target Start/End: Complemental strand, 55606416 - 55606235
Alignment:
Q  918 ttttcaattaagatagatgaaaatcatatttttactacatacttgattataaattacatactgttatttccttatctagtttagaacttcaaatctatct 1017  Q
    ||||||||| | |||||||||||| ||||||||| |||||| ||||| ||||||||||||  ||||||||||||| |||||||||||| ||||||| |||    
T  55606416 ttttcaattgatatagatgaaaattatatttttagtacatatttgatcataaattacataa-gttatttccttatatagtttagaactccaaatctttct 55606318  T
Q  1018 ctaggttaagttatttacattcctatcattatttaaaagttgtgcaatgttgtgattaattcacagcgcgacaaccgcaatct 1100  Q
    |||| ||||||||||||  || |||||||||||||| ||||||||||||||||||||||||||||  |||||||||| |||||    
T  55606317 ctagtttaagttatttaagttactatcattatttaagagttgtgcaatgttgtgattaattcacaatgcgacaaccgtaatct 55606235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 100; E-Value: 7e-49
Query Start/End: Original strand, 185 - 595
Target Start/End: Complemental strand, 38422804 - 38422420
Alignment:
Q  185 ttttgtaatttcaattatatg---ttcattcaaaactgctttagtattt----ctagtttcttatcctaagtttggattaatcacatatatttaagggtg 277  Q
    |||||||||||||||||| |    |||||||||||| | ||||||||||    |||||||||||||||||||||| ||         |||||||||||||    
T  38422804 ttttgtaatttcaattatgttcatttcattcaaaaccgatttagtatttatttctagtttcttatcctaagtttgtat---------atatttaagggtg 38422714  T
Q  278 caaaactaaagaaaattagttgatcatcaaattttttgaatcaa-gaggatgagttttggatgaattattaccttctctcactcccaacataattcaaag 376  Q
    ||||||||||||||||| ||||||||| |||  | ||||||||| ||||||  ||||||||||||||||| ||||  |  |   ||||||||||||||||    
T  38422713 caaaactaaagaaaattggttgatcatgaaaagtcttgaatcaaagaggataggttttggatgaattattcccttgccctag--ccaacataattcaaag 38422616  T
Q  377 taattttattttattagataagtgccctacctaatggccatatggtggaaacacgatataaaatgtcttcatacaaaactactagactgtaacaacgagg 476  Q
    |||||| |  |||||||||||||| ||||    ||||||| | ||||||| |||||||||||| |||||||                     |||| |||    
T  38422615 taattt-acattattagataagtggccta----atggccacacggtggaagcacgatataaaacgtcttca---------------------caacaagg 38422542  T
Q  477 acaattcttgatatata--acaaacttgaaaatgatattttccattgaaagagttt-aacatttgttatgtgaagcaacaaaatatccattatgtgatat 573  Q
    |||||||||||||||||  |||||||||||||||||| ||| | |||||||||||| ||||||||| |||||||||||||||||||||||||||| | ||    
T  38422541 acaattcttgatatatataacaaacttgaaaatgatactttaccttgaaagagttttaacatttgtcatgtgaagcaacaaaatatccattatgtcaaat 38422442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 91; E-Value: 2e-43
Query Start/End: Original strand, 918 - 1096
Target Start/End: Original strand, 28146982 - 28147159
Alignment:
Q  918 ttttcaattaagatagatgaaaatcatatttttactacatacttgattataaattacatactgttatttccttatctagtttagaacttcaaatctatct 1017  Q
    ||||||||| |||||||||||||||||||||||| |||||| ||||| ||||||||||||  ||||| |||||||||| ||||||| | ||||||| ||     
T  28146982 ttttcaattgagatagatgaaaatcatatttttagtacatatttgatcataaattacata-agttatctccttatctaatttagaattccaaatctttcc 28147080  T
Q  1018 ctaggttaagttatttacattcctatcattatttaaaagttgtgcaatgttgtgattaattcacagcgcgacaaccgca 1096  Q
    |||| ||||||||||||  ||  ||  ||||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  28147081 ctagtttaagttatttaagttgataatattatttaagagttgtgcaatgttgtgattaattcacaccgcgacaaccgca 28147159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 90; E-Value: 7e-43
Query Start/End: Original strand, 918 - 1099
Target Start/End: Original strand, 25967999 - 25968179
Alignment:
Q  918 ttttcaattaagatagatgaaaatcatatttttactacatacttgattataaattacatactgttatttccttatctagtttagaacttcaaatctatct 1017  Q
    ||||||||| | |||||||| ||||||||||||  |||||| ||||| ||||||||||||  ||||| | ||||||||||||||||| ||| |||| |||    
T  25967999 ttttcaattgatatagatgataatcatatttttggtacatatttgataataaattacataa-gttatcttcttatctagtttagaacgtcagatctttct 25968097  T
Q  1018 ctaggttaagttatttacattcctatcattatttaaaagttgtgcaatgttgtgattaattcacagcgcgacaaccgcaatc 1099  Q
    |||| ||||||||| ||  |  |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  25968098 ctagtttaagttatgtaagtgactatcattatttaagagttgtgcaatgttgtgattaattcacaccgcgacaaccgcaatc 25968179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 78; E-Value: 1e-35
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 38422935 - 38422858
Alignment:
Q  20 gtctctgcctttgaggctgttgttcttgttctcaccctctgcttcttttacctttgttgtggttgcagcttctgattt 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38422935 gtctctgcctttgaggctgttgttcttgttctcaccctctgcttcttttacctttgttgtggttgcagcttctgattt 38422858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 918 - 1091
Target Start/End: Complemental strand, 13198250 - 13198078
Alignment:
Q  918 ttttcaattaagatagatgaaaatcatatttttactacatacttgattataaattacatactgttatttccttatctagtttagaacttcaaatctatct 1017  Q
    ||||||||| ||||| |||||||||||||| ||| | |||| ||||| ||||||||||||  ||||| |||||||||| ||||||||| ||||||| | |    
T  13198250 ttttcaattgagatacatgaaaatcatattcttagtgcatatttgatcataaattacataa-gttatctccttatctaatttagaactccaaatctttgt 13198152  T
Q  1018 ctaggttaagttatttacattcctatcattatttaaaagttgtgcaatgttgtgattaattcacagcgcgacaa 1091  Q
    |||| |||||||||  |  || | |||||| ||||| |||||||||||||||||||||||||||| ||||||||    
T  13198151 ctagtttaagttatcaaagttacgatcattgtttaagagttgtgcaatgttgtgattaattcacaccgcgacaa 13198078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 918 - 1000
Target Start/End: Original strand, 11440588 - 11440670
Alignment:
Q  918 ttttcaattaagatagatgaaaatcatatttttactacatacttgattataaattacatactgttatttccttatctagttta 1000  Q
    |||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||| |||||| | ||||| |||||||    
T  11440588 ttttcaattaagatagatgaaaatcatatttttagtacatatttgatcataaattacataatgttatcttcttatatagttta 11440670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 1023 - 1149
Target Start/End: Original strand, 11440668 - 11440797
Alignment:
Q  1023 ttaagttatttacattcctatcattatt---taaaagttgtgcaatgttgtgattaattcacagcgcgacaaccgcaatctataatacaatatatgtaac 1119  Q
    |||||||||||||||| |||||||||||   ||| |||||  ||||||||||||||||||||| |||||||||  ||||| ||||  ||| ||  |||||    
T  11440668 ttaagttatttacattactatcattattatttaagagttgaacaatgttgtgattaattcacaccgcgacaacaacaatccataacgcaacattcgtaac 11440767  T
Q  1120 ggccgaaatggtgaaatcatatacacgacc 1149  Q
     |||||||| |||||||||||| |||||||    
T  11440768 agccgaaatcgtgaaatcatatccacgacc 11440797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 739 - 811
Target Start/End: Complemental strand, 38407613 - 38407541
Alignment:
Q  739 attgaaagatattttttaatggcgatatccaccgaaagattaatgctgatttgtgaatcacatttagtttgct 811  Q
    |||||||||| |||||||||||| |||||||| |||||||||||||| ||||||||||||||||  |||||||    
T  38407613 attgaaagattttttttaatggcaatatccacagaaagattaatgctaatttgtgaatcacattgggtttgct 38407541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 839 - 909
Target Start/End: Original strand, 25967801 - 25967872
Alignment:
Q  839 aggttttaaaaaatggtccattaccgagaaaaaggcggcgacaaaaa-gtataggtagccgacgttaccgtt 909  Q
    ||||||||||| ||||||| |||||||||| ||||| |||||||||| ||||||||||| ||||||||||||    
T  25967801 aggttttaaaatatggtccgttaccgagaataaggctgcgacaaaaaggtataggtagcggacgttaccgtt 25967872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 168 - 230
Target Start/End: Complemental strand, 38407791 - 38407731
Alignment:
Q  168 aatcaatgctttttagcttttgtaatttcaattatatgttcattcaaaactgctttagtattt 230  Q
    |||||| |||||||||||||||||||||||||  ||||||||||||||||  |||||||||||    
T  38407791 aatcaaagctttttagcttttgtaatttcaat--tatgttcattcaaaaccactttagtattt 38407731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 609 - 701
Target Start/End: Complemental strand, 38422357 - 38422270
Alignment:
Q  609 atccacaatcataccaaccattgacattagtagatcttactcaatacaacattgtcccaagtgagtgttcattgcaaacatttttgtttgaaa 701  Q
    ||||||||||||||||||||||   ||||| |||||||||| || ||||||||||| |||||||  |||| ||| |||||||| |||||||||    
T  38422357 atccacaatcataccaaccatt---attagcagatcttactgaagacaacattgtctcaagtga--gttccttgtaaacatttctgtttgaaa 38422270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 662 - 720
Target Start/End: Complemental strand, 38407688 - 38407632
Alignment:
Q  662 gtcccaagtgagtgttcattgcaaacatttttgtttgaaatgattaattcttcaagatt 720  Q
    |||||||||||||  |||||| |||||||||||||||||| ||||||| ||||||||||    
T  38407688 gtcccaagtgagt--tcattgtaaacatttttgtttgaaaagattaatgcttcaagatt 38407632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 839 - 909
Target Start/End: Original strand, 28146787 - 28146858
Alignment:
Q  839 aggttttaaaaaatggtccattaccgagaaaaaggcggcgacaaaaa-gtataggtagccgacgttaccgtt 909  Q
    ||||||||||||| ||||  |||| ||||||||||| || ||||||| ||||||||||| ||| ||||||||    
T  28146787 aggttttaaaaaacggtctgttacggagaaaaaggccgcaacaaaaaggtataggtagcggacattaccgtt 28146858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1057 - 1100
Target Start/End: Original strand, 29866160 - 29866203
Alignment:
Q  1057 ttgtgcaatgttgtgattaattcacagcgcgacaaccgcaatct 1100  Q
    |||||||||||||||||||||||||| | |||||||| ||||||    
T  29866160 ttgtgcaatgttgtgattaattcacaccacgacaaccacaatct 29866203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 953 - 1053
Target Start/End: Complemental strand, 46308487 - 46308387
Alignment:
Q  953 tacatacttgattataaattacatactgttatttccttatctagtttagaacttcaaatctatctct-aggttaagttatttacattcctatcattattt 1051  Q
    |||||| ||||| ||||||||||||  ||||| ||||||  ||||||||||||  |||||| ||||| |  ||||||||||||  || ||||||||||||    
T  46308487 tacatatttgatcataaattacataa-gttatctccttagttagtttagaactctaaatctctctctcaatttaagttatttaagttactatcattattt 46308389  T
Q  1052 aa 1053  Q
    ||    
T  46308388 aa 46308387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 107; Significance: 5e-53; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 5e-53
Query Start/End: Original strand, 913 - 1099
Target Start/End: Complemental strand, 25636079 - 25635893
Alignment:
Q  913 gtatcttttcaattaagatagatgaaaatcatatttttactacatacttgattataaattacatactgttatttccttatctagtttagaacttcaaatc 1012  Q
    |||| ||||||||| | ||||||||||||||||| |||| |||||| || || |||||||||||| |||||| ||||| |||||||||||||| ||||||    
T  25636079 gtattttttcaattgaaatagatgaaaatcatatctttagtacatatttaatcataaattacataatgttatctccttgtctagtttagaactccaaatc 25635980  T
Q  1013 tatctctaggttaagttatttacattcctatcattatttaaaagttgtgcaatgttgtgattaattcacagcgcgacaaccgcaatc 1099  Q
    ||||| ||| ||||||||||||||||  ||||||||||||| || ||||||||||||||||||||||||| ||| ||||||||||||    
T  25635979 tatctttagtttaagttatttacattattatcattatttaagaggtgtgcaatgttgtgattaattcacaccgcaacaaccgcaatc 25635893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 3e-45
Query Start/End: Original strand, 919 - 1104
Target Start/End: Complemental strand, 39653626 - 39653441
Alignment:
Q  919 tttcaattaagatagatgaaaatcatatttttactacatacttgattataaattacatactgttatttccttatctagtttagaacttcaaatctatctc 1018  Q
    |||||||| | ||||||||| |||||||||||| |||||| ||||| |||||||||||| |||||| || ||||||||||||||||| ||| | ||| ||    
T  39653626 tttcaattgaaatagatgaacatcatatttttagtacatatttgatcataaattacataatgttatctctttatctagtttagaactccaactttatatc 39653527  T
Q  1019 taggttaagttatttacattcctatcattatttaaaagttgtgcaatgttgtgattaattcacagcgcgacaaccgcaatctataa 1104  Q
    ||| ||||||||||||| || |||||||||||||| ||||||| ||| |||||||||||||||| ||| |||||| ||||| ||||    
T  39653526 tagtttaagttatttacgttgctatcattatttaagagttgtggaatattgtgattaattcacaccgcaacaaccacaatccataa 39653441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 918 - 1103
Target Start/End: Complemental strand, 47363874 - 47363689
Alignment:
Q  918 ttttcaattaagat-agatgaaaatcatatttttactacatacttgattataaattacatactgttatttccttatctagtttagaacttcaaatctatc 1016  Q
    ||||||||| |||| ||||||||| |||||||||| |||||| ||||| ||| ||||||||  ||||| |||||||||||||||||||||||||||| ||    
T  47363874 ttttcaattgagattagatgaaaagcatatttttagtacatatttgatcatagattacataa-gttatctccttatctagtttagaacttcaaatctttc 47363776  T
Q  1017 tctaggttaagttatttacattcctatcattatttaaaagttgtgcaatgttgtgattaattcacagcgcgacaaccgcaatctata 1103  Q
    ||||| ||||||||||||  ||  ||||||||||||| | |||||||||||| ||||||||||||| |  |||||||||||| ||||    
T  47363775 tctagtttaagttatttaagttattatcattatttaagacttgtgcaatgttttgattaattcacaccaagacaaccgcaatttata 47363689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 918 - 1026
Target Start/End: Complemental strand, 10493579 - 10493472
Alignment:
Q  918 ttttcaattaagatagatgaaaatcatatttttactacatacttgattataaattacatactgttatttccttatctagtttagaacttcaaatctatct 1017  Q
    ||||||||| |||| ||||||| ||||||||||| | |||| ||||| |||||||||||| |||||| ||||||| ||||||||| || |||||| ||||    
T  10493579 ttttcaattgagatggatgaaa-tcatatttttaatgcatatttgatcataaattacataatgttatctccttatatagtttagacctccaaatccatct 10493481  T
Q  1018 ctaggttaa 1026  Q
    |||| ||||    
T  10493480 ctagtttaa 10493472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 1023 - 1082
Target Start/End: Complemental strand, 10493435 - 10493376
Alignment:
Q  1023 ttaagttatttacattcctatcattatttaaaagttgtgcaatgttgtgattaattcaca 1082  Q
    ||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||    
T  10493435 ttaagttatttacgttactatcattatttaagagttgtgcaatgttgtgattaattcaca 10493376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 918 - 1104
Target Start/End: Original strand, 33049115 - 33049311
Alignment:
Q  918 ttttcaattaagatagatgaaaatcatatttttactacatacttgattataaattacatactgttatttcctt----------atctagtttagaacttc 1007  Q
    ||||||||| |||| ||||||||||| ||||||| |||||| ||||  |||||||||| |  ||||| |||||          |||||||||| ||||||    
T  33049115 ttttcaattgagatggatgaaaatcacatttttagtacatatttgaacataaattacagaaggttatctcctttatgctctttatctagttta-aacttc 33049213  T
Q  1008 aaatctatctctaggttaagttatttacattcctat-cattatttaaaagttgtgcaatgttgtgattaattcacagcgcgacaaccgcaatctataa 1104  Q
    |||||||||||||  | ||||||||||  ||  ||| |||||||||| |||||||||||||| ||||||||||||| | |||| ||| ||||| ||||    
T  33049214 aaatctatctctatttcaagttatttaagttattatacattatttaagagttgtgcaatgttttgattaattcacacctcgacgaccacaatccataa 33049311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 1014 - 1099
Target Start/End: Complemental strand, 7493138 - 7493053
Alignment:
Q  1014 atctctaggttaagttatttacattcctatcattatttaaaagttgtgcaatgttgtgattaattcacagcgcgacaaccgcaatc 1099  Q
    |||||||| |||| |||||||| || |||||||||||||| ||||||| |||||||||||||||||||| || || |||| |||||    
T  7493138 atctctagtttaaattatttacgttactatcattatttaagagttgtgtaatgttgtgattaattcacaccgtgataaccacaatc 7493053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 842 - 909
Target Start/End: Complemental strand, 47364030 - 47363963
Alignment:
Q  842 ttttaaaaaatggtccattaccgagaaaaaggcggcgacaaaaagtataggtagccgacgttaccgtt 909  Q
    |||||||||| ||||| ||||||||||||||||  | |||||||||||||||||| ||||||||||||    
T  47364030 ttttaaaaaacggtccgttaccgagaaaaaggccaccacaaaaagtataggtagcggacgttaccgtt 47363963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 946 - 1011
Target Start/End: Original strand, 45435419 - 45435484
Alignment:
Q  946 tttttactacatacttgattataaattacatactgttatttccttatctagtttagaacttcaaat 1011  Q
    |||||| |||||| ||||| |||||||||||| |||||| || |||||||||||||||||||||||    
T  45435419 tttttagtacatatttgatcataaattacataatgttatctctttatctagtttagaacttcaaat 45435484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 989 - 1082
Target Start/End: Original strand, 31742958 - 31743052
Alignment:
Q  989 ttatctagtttagaacttcaaatctatctctaggttaagttatttacattcctat-cattatttaaaagttgtgcaatgttgtgattaattcaca 1082  Q
    ||||||| || | |||||||||||||||||||  ||||||||||||  ||  ||| |||||||||| |  |||||||||||||||||||||||||    
T  31742958 ttatctacttcaaaacttcaaatctatctctaatttaagttatttaagttattatacattatttaagaactgtgcaatgttgtgattaattcaca 31743052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 1000 - 1098
Target Start/End: Original strand, 45435503 - 45435603
Alignment:
Q  1000 agaacttcaaatctatctctaggttaagttat--ttacattcctatcattatttaaaagttgtgcaatgttgtgattaattcacagcgcgacaaccgcaa 1097  Q
    |||||||||||| |||||| |  |||||||||  || |||| |||| ||||||||| ||||||||||| |||| ||||||||||| ||||| ||| ||||    
T  45435503 agaacttcaaatttatctccaatttaagttatatttccattactattattatttaagagttgtgcaatattgttattaattcacaccgcgataactgcaa 45435602  T
Q  1098 t 1098  Q
    |    
T  45435603 t 45435603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 3e-48; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 3e-48
Query Start/End: Original strand, 918 - 1100
Target Start/End: Complemental strand, 37794821 - 37794640
Alignment:
Q  918 ttttcaattaagatagatgaaaatcatatttttactacatacttgattataaattacatactgttatttccttatctagtttagaacttcaaatctatct 1017  Q
    ||||||||| ||||||| |||||||||||||||| |||||| ||||| ||||||||||||  ||||| |||||||||||||||||||| ||||||| |||    
T  37794821 ttttcaattgagatagaagaaaatcatatttttagtacatatttgatcataaattacataa-gttatctccttatctagtttagaactccaaatctttct 37794723  T
Q  1018 ctaggttaagttatttacattcctatcattatttaaaagttgtgcaatgttgtgattaattcacagcgcgacaaccgcaatct 1100  Q
    || |  |||||||| ||  || |||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||    
T  37794722 ctggtctaagttatctaagttactatcattatttaagagttgtgcaatgttgtgattaattcacaccacgacaaccgcaatct 37794640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 1e-47
Query Start/End: Original strand, 918 - 1099
Target Start/End: Complemental strand, 17989157 - 17988977
Alignment:
Q  918 ttttcaattaagatagatgaaaatcatatttttactacatacttgattataaattacatactgttatttccttatctagtttagaacttcaaatctatct 1017  Q
    ||||||||| |||| ||||||||||||||||||| |||||| ||||| |||||||| ||| | |||| |||||||||||||||||||| ||||||| | |    
T  17989157 ttttcaattgagatcgatgaaaatcatatttttagtacatatttgatcataaattatataat-ttatctccttatctagtttagaactccaaatcttttt 17989059  T
Q  1018 ctaggttaagttatttacattcctatcattatttaaaagttgtgcaatgttgtgattaattcacagcgcgacaaccgcaatc 1099  Q
    |||| ||||||||||||  || |||||||||||||| ||||||||||| |||||||||||||||| | ||||||||||||||    
T  17989058 ctagtttaagttatttaagttactatcattatttaagagttgtgcaatattgtgattaattcacacctcgacaaccgcaatc 17988977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 1e-35
Query Start/End: Original strand, 981 - 1178
Target Start/End: Original strand, 5430210 - 5430407
Alignment:
Q  981 ttatttccttatctagtttagaacttcaaatctatctctaggttaagttatttacattcctatcattatttaaaagttgtgcaatgttgtgattaattca 1080  Q
    |||| |||||||||| ||||||| | ||| ||||||||||| ||||||||||||  || |||||||||||||| ||||||||||| ||||||||||||||    
T  5430210 ttatctccttatctactttagaaatccaactctatctctagtttaagttatttatgttactatcattatttaagagttgtgcaatattgtgattaattca 5430309  T
Q  1081 cagcgcgacaaccgcaatctataatacaatatatgtaacggccgaaatggtgaaatcatatacacgacctggaccttgaccgcgaccgttgtttaaaa 1178  Q
    || |||||||||| |||||| |||| ||| ||  |||||  ||||||| || ||||||||||| |||||  ||| |||  ||||||| || |||||||    
T  5430310 caccgcgacaaccacaatctgtaatgcaacatccgtaacaaccgaaatcgtaaaatcatatacgcgaccgcgacattgttcgcgaccattatttaaaa 5430407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 1008 - 1098
Target Start/End: Original strand, 19263821 - 19263911
Alignment:
Q  1008 aaatctatctctaggttaagttatttacattcctatcattatttaaaagttgtgcaatgttgtgattaattcacagcgcgacaaccgcaat 1098  Q
    ||||||||||||||  |||||||||||  || |||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||    
T  19263821 aaatctatctctagtataagttatttatgttactatcattatttaagaattgtgcaatgttgtgattaattcacagcgcaacaaccgcaat 19263911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 1024 - 1096
Target Start/End: Complemental strand, 35016388 - 35016316
Alignment:
Q  1024 taagttatttacattcctatcattatttaaaagttgtgcaatgttgtgattaattcacagcgcgacaaccgca 1096  Q
    |||||||||||  || |||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||    
T  35016388 taagttatttaagttactatcattatttaagagttgtgtaatgttgtgattaattcacaccgcgacaaccgca 35016316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 928 - 1013
Target Start/End: Complemental strand, 35016541 - 35016457
Alignment:
Q  928 agatagatgaaaatcatatttttactacatacttgattataaattacatactgttatttccttatctagtttagaacttcaaatct 1013  Q
    |||||||||||||||||||||||  |||||| ||||| |||||||| |||  ||||| |||||||||||||||||| | |||||||    
T  35016541 agatagatgaaaatcatatttttgatacatatttgatcataaattatata-agttatctccttatctagtttagaattccaaatct 35016457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 919 - 977
Target Start/End: Original strand, 5428641 - 5428699
Alignment:
Q  919 tttcaattaagatagatgaaaatcatatttttactacatacttgattataaattacata 977  Q
    |||||||| |||||||||||||||||||| ||| |||||| ||||| ||||||||||||    
T  5428641 tttcaattgagatagatgaaaatcatattattagtacataattgatcataaattacata 5428699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 919 - 971
Target Start/End: Original strand, 19263772 - 19263824
Alignment:
Q  919 tttcaattaagatagatgaaaatcatatttttactacatacttgattataaat 971  Q
    |||||||| |||||||||||||||||||||||| |||||| ||||| ||||||    
T  19263772 tttcaattgagatagatgaaaatcatatttttaatacatatttgatcataaat 19263824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1058 - 1100
Target Start/End: Original strand, 20929880 - 20929922
Alignment:
Q  1058 tgtgcaatgttgtgattaattcacagcgcgacaaccgcaatct 1100  Q
    |||||| |||||||||||||||||| |||||||||||| ||||    
T  20929880 tgtgcattgttgtgattaattcacaccgcgacaaccgcgatct 20929922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 3e-45; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 3e-45
Query Start/End: Original strand, 918 - 1099
Target Start/End: Complemental strand, 11783577 - 11783396
Alignment:
Q  918 ttttcaattaagatagatgaaaatcatatttttactacatacttgattataaattacatactgttatttccttatctagtttagaacttcaaatctatct 1017  Q
    ||||||||| |||||||||||||||||||||||| |||||| ||||| |||||||||| | |||| | ||||| |||||||||||||| |||||||||||    
T  11783577 ttttcaattgagatagatgaaaatcatatttttagtacatatttgatcataaattacacaatgttgtctccttgtctagtttagaactccaaatctatct 11783478  T
Q  1018 ctaggttaagttatttacattcctatcattatttaaaagttgtgcaatgttgtgattaattcacagcgcgacaaccgcaatc 1099  Q
    || | ||||||| ||||  || |||||||||||||| |||||||||||||||| |||| ||||||  ||||||||| |||||    
T  11783477 cttgtttaagttctttatgttactatcattatttaagagttgtgcaatgttgtaattacttcacaaagcgacaaccacaatc 11783396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 3e-36
Query Start/End: Original strand, 918 - 1079
Target Start/End: Original strand, 7299106 - 7299267
Alignment:
Q  918 ttttcaattaagata-gatgaaaatcatatttttactacatacttgattataaattacatactgttatttccttatctagtttagaacttcaaatctatc 1016  Q
    ||||||||| ||||| |||||||| |||||||| | |||||| || || |||||||||||| |||||| |||||||||| ||||||| ||||||||||||    
T  7299106 ttttcaattgagatacgatgaaaaccatattttaagtacatatttaatcataaattacataatgttatctccttatctactttagaa-ttcaaatctatc 7299204  T
Q  1017 tctaggttaagttatttacattcctatcattatttaaaagttgtgcaatgttgtgattaattc 1079  Q
    ||||| ||||||||||||| || ||||| |||||||| |||||| |||||||||| |||||||    
T  7299205 tctagtttaagttatttacgttactatcgttatttaagagttgtacaatgttgtggttaattc 7299267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 838 - 907
Target Start/End: Original strand, 7298925 - 7298994
Alignment:
Q  838 gaggttttaaaaaatggtccattaccgagaaaaaggcggcgacaaaaagtataggtagccgacgttaccg 907  Q
    |||||||||||||| ||||| |||||||||||||||| |||||||||||||| |||||||||||||||||    
T  7298925 gaggttttaaaaaacggtccgttaccgagaaaaaggccgcgacaaaaagtatcggtagccgacgttaccg 7298994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 1045 - 1082
Target Start/End: Original strand, 53527191 - 53527228
Alignment:
Q  1045 attatttaaaagttgtgcaatgttgtgattaattcaca 1082  Q
    ||||||||||||||||||||||||||||||||||||||    
T  53527191 attatttaaaagttgtgcaatgttgtgattaattcaca 53527228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 2e-43; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 2e-43
Query Start/End: Original strand, 945 - 1099
Target Start/End: Original strand, 12990541 - 12990694
Alignment:
Q  945 atttttactacatacttgattataaattacatactgttatttccttatctagtttagaacttcaaatctatctctaggttaagttatttacattcctatc 1044  Q
    ||||||| |||||| ||||| |||||||||||| | |||| |||||||||||||||||||||||||||| ||||||| ||||||||||||  || |||||    
T  12990541 atttttaatacatatttgatcataaattacataat-ttatctccttatctagtttagaacttcaaatctttctctagtttaagttatttaagttactatc 12990639  T
Q  1045 attatttaaaagttgtgcaatgttgtgattaattcacagcgcgacaaccgcaatc 1099  Q
    ||||||||| |||||||||||||||||| ||||||||| ||||||||| ||||||    
T  12990640 attatttaagagttgtgcaatgttgtgactaattcacaccgcgacaactgcaatc 12990694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 91; E-Value: 2e-43
Query Start/End: Original strand, 919 - 1105
Target Start/End: Original strand, 34664779 - 34664964
Alignment:
Q  919 tttcaattaagatagatgaaaatcatatttttactacatacttgattataaattacatactgttatttccttatctagtttagaacttcaaatctatctc 1018  Q
    |||||||| |||||||||||||||||||||| | ||| || ||||| ||||||||||||  ||||| | |||||||||||||||||| || |||| |||     
T  34664779 tttcaattgagatagatgaaaatcatatttt-agtacgtatttgatcataaattacataacgttatcttcttatctagtttagaactccatatctgtcta 34664877  T
Q  1019 taggttaagttatttacattcctatcattatttaaaagttgtgcaatgttgtgattaattcacagcgcgacaaccgcaatctataat 1105  Q
    ||| ||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||| | || ||||||| ||||| |||||    
T  34664878 tagtttaagttatttacgttactatcattatttaaaagttgtgcaatgttgtaattaattcataccgtgacaaccacaatccataat 34664964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 913 - 1099
Target Start/End: Complemental strand, 32617744 - 32617560
Alignment:
Q  913 gtatcttttcaattaagatagatgaaaatcatatttttactacatacttgattataaattacatactgttatttccttatctagtttagaacttcaaatc 1012  Q
    |||| ||||||||| |||||||||||||||||||||||| |||||| ||||| ||||||||||||  ||||| ||||||||||||||| ||||  |||      
T  32617744 gtattttttcaattgagatagatgaaaatcatatttttagtacatatttgatcataaattacataa-gttatctccttatctagttta-aactctaaaga 32617647  T
Q  1013 tatctctaggttaagttatttacattcctatcattatttaaaagttgtgcaatgttgtgattaattcacagcgcgacaaccgcaatc 1099  Q
    | ||||||| |||||||||| |  || ||||| |||||||| |||||||||||||||||||||||| ||| ||||||||||||||||    
T  32617646 tttctctagtttaagttattcaagttactatcgttatttaagagttgtgcaatgttgtgattaatttacaccgcgacaaccgcaatc 32617560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 4e-32
Query Start/End: Original strand, 918 - 1099
Target Start/End: Original strand, 9457617 - 9457794
Alignment:
Q  918 ttttcaattaagatagatgaaaatcatatttttactacatacttgattataaattacatactgttatttccttatctagtttagaacttcaaatctatct 1017  Q
    ||||||||| |||||||| ||||||||||||||  ||||||  |||| |||||||||  |  ||||| |||||| || ||||||||||  ||||||   |    
T  9457617 ttttcaattgagatagataaaaatcatatttttgatacatatctgatcataaattactcaa-gttatctccttaccttgtttagaactcaaaatct---t 9457712  T
Q  1018 ctaggttaagttatttacattcctatcattatttaaaagttgtgcaatgttgtgattaattcacagcgcgacaaccgcaatc 1099  Q
    |||| ||||||||||||  || |||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||    
T  9457713 ctagtttaagttatttaagttactatcattatttaagagttgtgcaatgttgtgattaattcacaccgcaacaaccgcaatc 9457794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 72; E-Value: 4e-32
Query Start/End: Original strand, 918 - 1099
Target Start/End: Original strand, 9461714 - 9461891
Alignment:
Q  918 ttttcaattaagatagatgaaaatcatatttttactacatacttgattataaattacatactgttatttccttatctagtttagaacttcaaatctatct 1017  Q
    ||||||||| |||||||| ||||||||||||||  ||||||  |||| |||||||||  |  ||||| |||||| || ||||||||||  ||||||   |    
T  9461714 ttttcaattgagatagataaaaatcatatttttgatacatatctgatcataaattactcaa-gttatctccttaccttgtttagaactcaaaatct---t 9461809  T
Q  1018 ctaggttaagttatttacattcctatcattatttaaaagttgtgcaatgttgtgattaattcacagcgcgacaaccgcaatc 1099  Q
    |||| ||||||||||||  || |||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||    
T  9461810 ctagtttaagttatttaagttactatcattatttaagagttgtgcaatgttgtgattaattcacaccgcaacaaccgcaatc 9461891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 918 - 1093
Target Start/End: Complemental strand, 14081872 - 14081707
Alignment:
Q  918 ttttcaattaagatagatgaaaatcatatttttactacatacttgattataaattacat-actgttatttccttatctagtttagaacttcaaatctatc 1016  Q
    ||||||||| |||||||||||||||| ||||||| || ||| |||||    |||||||| | |||||| || ||||||| |||||||     ||||||||    
T  14081872 ttttcaattgagatagatgaaaatcaaatttttagtatatatttgat----aattacattaatgttatctcattatctaatttagaa-----aatctatc 14081782  T
Q  1017 tctaggttaagttatttacattcctatcattatttaaaagttgtgcaatgttgtgattaattcacagcgcgacaacc 1093  Q
    ||||| ||||||||||||  || ||  ||||||||||||||| |||||||||||||||||| ||||  |||||||||    
T  14081781 tctagtttaagttatttaagttgct--cattatttaaaagttatgcaatgttgtgattaatgcacactgcgacaacc 14081707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 838 - 909
Target Start/End: Complemental strand, 32617931 - 32617859
Alignment:
Q  838 gaggttttaaaaaatggtccattaccgagaaaaaggcggcgacaaaaa-gtataggtagccgacgttaccgtt 909  Q
    |||||||||||||| ||||  |||||||||||||||| || ||||||| ||||||||||| ||||||||||||    
T  32617931 gaggttttaaaaaacggtcggttaccgagaaaaaggccgccacaaaaaggtataggtagcggacgttaccgtt 32617859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 839 - 909
Target Start/End: Original strand, 9457446 - 9457517
Alignment:
Q  839 aggttttaaaaaatggtccattaccgagaaaaaggcggcgacaaaaa-gtataggtagccgacgttaccgtt 909  Q
    ||||||||||||||||| | |||||||| ||||||| |||||||||| ||||||| ||| |||||| |||||    
T  9457446 aggttttaaaaaatggttcgttaccgagtaaaaggccgcgacaaaaaggtataggcagcggacgttgccgtt 9457517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 839 - 909
Target Start/End: Original strand, 9461543 - 9461614
Alignment:
Q  839 aggttttaaaaaatggtccattaccgagaaaaaggcggcgacaaaaa-gtataggtagccgacgttaccgtt 909  Q
    ||||||||||||||||| | |||||||| ||||||| |||||||||| ||||||| ||| |||||| |||||    
T  9461543 aggttttaaaaaatggttcgttaccgagtaaaaggccgcgacaaaaaggtataggcagcggacgttgccgtt 9461614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 840 - 909
Target Start/End: Original strand, 12990144 - 12990214
Alignment:
Q  840 ggttttaaaaaatggtccattaccgagaaaaaggcggcgacaaaaa-gtataggtagccgacgttaccgtt 909  Q
    |||||||||||| ||| | |||||||||||||||| |||| ||||| ||||||||||  ||||||||||||    
T  12990144 ggttttaaaaaacggttcgttaccgagaaaaaggctgcgataaaaaggtataggtagtggacgttaccgtt 12990214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 918 - 997
Target Start/End: Complemental strand, 24699966 - 24699887
Alignment:
Q  918 ttttcaattaagatagatgaaaatcatatttttactacatacttgattataaattacatactgttatttccttatctagt 997  Q
    ||||||||| |||||||||||||| ||||||||  || ||| ||||| ||| |||||||| |||||| |  |||||||||    
T  24699966 ttttcaattgagatagatgaaaattatatttttcgtatatatttgataatatattacataatgttatctttttatctagt 24699887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1064 - 1101
Target Start/End: Original strand, 963102 - 963139
Alignment:
Q  1064 atgttgtgattaattcacagcgcgacaaccgcaatcta 1101  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  963102 atgttgtgattaattcacaccacgacaaccgcaatcta 963139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 4e-41; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 918 - 1096
Target Start/End: Complemental strand, 23490139 - 23489962
Alignment:
Q  918 ttttcaattaagatagatgaaaatcatatttttactacatacttgattataaattacatactgttatttccttatctagtttagaacttcaaatctatct 1017  Q
    ||||||||| |||||||||||||||||||||||  |||||| ||||| ||||||||||||  ||||| |||||||||||||||||||| ||||||| |||    
T  23490139 ttttcaattgagatagatgaaaatcatatttttcgtacatatttgatcataaattacataa-gttatctccttatctagtttagaactccaaatctttct 23490041  T
Q  1018 ctaggttaagttatttacattcctatcattatttaaaagttgtgcaatgttgtgattaattcacagcgcgacaaccgca 1096  Q
    |||| ||| ||| | ||  || |||||| ||||||| |||||| ||||||||||||||||||||| ||| |||||||||    
T  23490040 ctagtttatgttgtctaagttactatcagtatttaagagttgtacaatgttgtgattaattcacaccgcaacaaccgca 23489962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 9e-24
Query Start/End: Original strand, 1010 - 1099
Target Start/End: Original strand, 13402173 - 13402262
Alignment:
Q  1010 atctatctctaggttaagttatttacattcctatcattatttaaaagttgtgcaatgttgtgattaattcacagcgcgacaaccgcaatc 1099  Q
    |||||| | ||| ||||||||||||| || |||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||    
T  13402173 atctatttttagtttaagttatttaccttactatcattatttaagagttgtgtaatgttgtgattaattcacaccgcgacaaccgcaatc 13402262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 1023 - 1104
Target Start/End: Original strand, 13396888 - 13396969
Alignment:
Q  1023 ttaagttatttacattcctatcattatttaaaagttgtgcaatgttgtgattaattcacagcgcgacaaccgcaatctataa 1104  Q
    ||||||||||||| || |||||||||||||| ||||||| |||||||||||||||||||| ||||||| |||||||| ||||    
T  13396888 ttaagttatttaccttactatcattatttaagagttgtgtaatgttgtgattaattcacaccgcgacagccgcaatccataa 13396969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 918 - 1096
Target Start/End: Complemental strand, 7154439 - 7154249
Alignment:
Q  918 ttttcaattaagatagatgaaaatcatatttttactacatacttgattataaattacatactgttatttccttatctagtttagaacttcaaatctatct 1017  Q
    |||| ||| ||||||||||||||||||||||||| |||||| ||||| ||| |||||||| |  ||| |||||||||  || ||||||  ||||||||||    
T  7154439 ttttaaatgaagatagatgaaaatcatatttttaatacatatttgatcatatattacataattatatctccttatctgattcagaactcaaaatctatct 7154340  T
Q  1018 ctaggttaagttatttacattcctatcattatttaa----------aag--ttgtgcaatgttgtgattaattcacagcgcgacaaccgca 1096  Q
     | | |||||||||||||  |  |||||||||||||          |||  |||||||||||||||||||||||||| | |||||||||||    
T  7154339 atggtttaagttatttacggtattatcattatttaagactttatttaagacttgtgcaatgttgtgattaattcacatcacgacaaccgca 7154249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1041 - 1092
Target Start/End: Original strand, 14370805 - 14370856
Alignment:
Q  1041 tatcattatttaaaagttgtgcaatgttgtgattaattcacagcgcgacaac 1092  Q
    ||||||||  ||| |||||||||||||||||||||||||||| | |||||||    
T  14370805 tatcattaagtaagagttgtgcaatgttgtgattaattcacaccacgacaac 14370856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 918 - 976
Target Start/End: Complemental strand, 14867423 - 14867365
Alignment:
Q  918 ttttcaattaagatagatgaaaatcatatttttactacatacttgattataaattacat 976  Q
    ||||||||| |||| ||||||||||| ||||||| |||||| ||||  |||||||||||    
T  14867423 ttttcaattgagatggatgaaaatcacatttttagtacatatttgaacataaattacat 14867365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 839 - 896
Target Start/End: Complemental strand, 14867618 - 14867560
Alignment:
Q  839 aggttttaaaaaatggtccattaccgagaaaaaggcggcgacaaaaag-tataggtagc 896  Q
    ||||||||||||| ||||| |||| ||||||||||| |||||| |||| ||||||||||    
T  14867618 aggttttaaaaaacggtccgttactgagaaaaaggccgcgacagaaagatataggtagc 14867560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 841 - 906
Target Start/End: Complemental strand, 23490309 - 23490243
Alignment:
Q  841 gttttaaaaaatggtccattaccgagaaaaaggcggcgacaaaaa-gtataggtagccgacgttacc 906  Q
    |||||||| ||  |||| |||| ||||||||||| |||||||||| |||||||||||||| ||||||    
T  23490309 gttttaaagaaccgtccgttactgagaaaaaggccgcgacaaaaaggtataggtagccgaagttacc 23490243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 4e-38; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 920 - 1093
Target Start/End: Original strand, 41283493 - 41283664
Alignment:
Q  920 ttcaattaagatagatgaaaatcatatttttactacatacttgattataaattacatactgttatttccttatctagtttagaacttcaaatctatctct 1019  Q
    ||||||| |||||||||||||||  ||||||| |||| |  |||| |||||||| |||  ||||| |||||||||||||||||||||||||||| |||||    
T  41283493 ttcaattgagatagatgaaaatcccatttttagtacaaatctgatcataaatta-ataa-gttatctccttatctagtttagaacttcaaatctttctct 41283590  T
Q  1020 aggttaagttatttacattcctatcattatttaaaagttgtgcaatgttgtgattaattcacagcgcgacaacc 1093  Q
    || ||||||||||||  || ||||| ||||| ||||||||||||||||||||||||||||||| | ||||||||    
T  41283591 agtttaagttatttatgttactatctttattcaaaagttgtgcaatgttgtgattaattcacaccacgacaacc 41283664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 6e-37
Query Start/End: Original strand, 918 - 1092
Target Start/End: Complemental strand, 39426260 - 39426087
Alignment:
Q  918 ttttcaattaagatagatgaaaatcatat-ttttactacatacttgattataaattacatactgttatttccttatctagtttagaacttcaaatctatc 1016  Q
    ||||||||||||||||||||||||||||| ||||| |||||| ||||| |||||||||||| ||| || ||||||| |||||||||| | ||||| ||||    
T  39426260 ttttcaattaagatagatgaaaatcatatattttagtacatatttgatcataaattacataatgtcatctccttatatagtttagaa-tccaaatatatc 39426162  T
Q  1017 tctaggttaagttatttacattcctatcattatttaaaagttgtgcaatgttgtgattaattcacagcgcgacaac 1092  Q
    | ||  |||||||||||||||| |||||| ||| ||  |||||||||||||||| ||||||||||| |||||||||    
T  39426161 tatat-ttaagttatttacattactatcaatatgtatgagttgtgcaatgttgtaattaattcacaccgcgacaac 39426087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 1e-35
Query Start/End: Original strand, 918 - 1092
Target Start/End: Complemental strand, 22927236 - 22927061
Alignment:
Q  918 ttttcaattaagatagatgaaaatcatatttttactacatac--ttgattataaattacatactgttatttccttatctagtttagaacttcaaatctat 1015  Q
    ||||||||| |||||||||||||||||||||||  |||| ||  ||||| |||||| ||||| |||||| || || ||||||||||||| || |||||||    
T  22927236 ttttcaattgagatagatgaaaatcatattttttgtacacacatttgatcataaatcacata-tgttatctcattgtctagtttagaacctcgaatctat 22927138  T
Q  1016 ctctaggttaagttatttacattcctatcattatttaaaagttgtgcaatgttgtgattaattcacagcgcgacaac 1092  Q
    |||||| ||||||||||||  || || ||||||||||| ||||| |||||||||||||||||||||  |||||||||    
T  22927137 ctctagtttaagttatttatgttactttcattatttaagagttgggcaatgttgtgattaattcacgtcgcgacaac 22927061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 918 - 1099
Target Start/End: Original strand, 36491494 - 36491666
Alignment:
Q  918 ttttcaattaagatagatgaaaatcatatttttactacatacttgattataaattacatactgttatttccttatctagtttagaacttcaaatctatct 1017  Q
    |||||||||||||||||||||||||||||||||| |||||| || || ||||         ||||  ||||| |||||||||||||||  ||||||||||    
T  36491494 ttttcaattaagatagatgaaaatcatatttttagtacatatttaatcataa---------tgttggttcctcatctagtttagaactcaaaatctatct 36491584  T
Q  1018 ctaggttaagttatttacattcctatcattatttaaaagttgtgcaatgttgtgattaattcacagcgcgacaaccgcaatc 1099  Q
    |||| ||| ||||||||| || ||||||| |||||| | || ||||||||| ||||||||||||| || |||||||| ||||    
T  36491585 ctagtttatgttatttactttactatcatcatttaagaattttgcaatgttatgattaattcacaccgtgacaaccgtaatc 36491666  T

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Target: chr5; HSP #5
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 918 - 1092
Target Start/End: Complemental strand, 13424806 - 13424636
Alignment:
Q  918 ttttcaattaagatagatgaaaatcatatttttactacatacttgattataaattacatactgttatttcctta-tctagtttagaacttcaaatctatc 1016  Q
    ||||||||| | ||| |||||||| ||||||||| |||||| ||||| |||||| || ||  ||||| |||||| |||| ||||||| |  |||||| ||    
T  13424806 ttttcaattgaaataaatgaaaataatatttttagtacatatttgatcataaatcacgtaa-gttatctccttaatctattttagaattctaaatctttc 13424708  T
Q  1017 tctaggttaagttatttacattcctatcattatttaaaagttgtgcaatgttgtgattaattcacagcgcgacaac 1092  Q
    ||||  ||||||||||||  ||    ||||||||||| |||||||||||||||||||||||||||| | |||||||    
T  13424707 tctattttaagttatttaagtt----tcattatttaagagttgtgcaatgttgtgattaattcacaccacgacaac 13424636  T

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Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 839 - 905
Target Start/End: Complemental strand, 13424954 - 13424887
Alignment:
Q  839 aggttttaaaaaatggtccattaccgagaaaaaggcggcgacaaaaa-gtataggtagccgacgttac 905  Q
    ||||||||||| |||||||||||||||||||||| | |||| ||||| |||||||||||||| |||||    
T  13424954 aggttttaaaatatggtccattaccgagaaaaagaccgcgaaaaaaaggtataggtagccgatgttac 13424887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 839 - 909
Target Start/End: Original strand, 19967312 - 19967383
Alignment:
Q  839 aggttttaaaaaatggtccattaccgagaaaaaggcggcgacaaaaa-gtataggtagccgacgttaccgtt 909  Q
    |||||||||||||  |||||||||||||||||||||  || |||||| ||| |||||||||| |||||||||    
T  19967312 aggttttaaaaaacagtccattaccgagaaaaaggccacggcaaaaaggtacaggtagccgaagttaccgtt 19967383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 918 - 977
Target Start/End: Complemental strand, 16341584 - 16341523
Alignment:
Q  918 ttttcaattaagatagatgaaaatcatatttttactacatacttgat--tataaattacata 977  Q
    ||||||||| ||||||||||||| |||||||||| |||||| |||||  |||||||||||||    
T  16341584 ttttcaattgagatagatgaaaaacatatttttagtacatatttgatcatataaattacata 16341523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 1060 - 1182
Target Start/End: Original strand, 19967627 - 19967749
Alignment:
Q  1060 tgcaatgttgtgattaattcacagcgcgacaaccgcaatctataatacaatatatgtaacggccgaaatggtgaaatcatatacacgacctggaccttga 1159  Q
    |||||||||||||||||||| ||  |||||||||||||||  |  | ||| |    ||||||||||||| | |||||| ||| | | |||| ||||||||    
T  19967627 tgcaatgttgtgattaattctcactgcgacaaccgcaatcagtgttgcaacacccataacggccgaaatcgcgaaatcctatccgcaacctcgaccttga 19967726  T
Q  1160 ccgcgaccgttgtttaaaacctt 1182  Q
    | ||||||||| |||||||||||    
T  19967727 ctgcgaccgttatttaaaacctt 19967749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1057 - 1100
Target Start/End: Original strand, 37247652 - 37247695
Alignment:
Q  1057 ttgtgcaatgttgtgattaattcacagcgcgacaaccgcaatct 1100  Q
    ||||||| |||||||||||||||||| |||||||||| ||||||    
T  37247652 ttgtgcattgttgtgattaattcacaccgcgacaaccacaatct 37247695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 839 - 909
Target Start/End: Original strand, 41283294 - 41283365
Alignment:
Q  839 aggttttaaaaaatggtccattaccgagaaaaaggcggcgacaaaa-agtataggtagccgacgttaccgtt 909  Q
    ||||||||||||| ||||| ||||  |||||||||  | ||||||| |||||||||||| ||||||||||||    
T  41283294 aggttttaaaaaacggtccgttactaagaaaaaggtcgtgacaaaaaagtataggtagcggacgttaccgtt 41283365  T

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Target: chr6 (Bit Score: 75; Significance: 6e-34; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 918 - 1087
Target Start/End: Original strand, 9177588 - 9177760
Alignment:
Q  918 ttttcaattaagatagatgaaaatcatatttttactacatacttgatt------ataaattacatactgttatttccttatctagtttagaacttcaaat 1011  Q
    ||||||||| |||| ||||||||||||||||||| |||||| |||| |      |||||||||||| |||||| ||   | ||||||||||||| |||||    
T  9177588 ttttcaattgagattgatgaaaatcatatttttagtacatatttgaatttgatcataaattacataatgttatctc---acctagtttagaactccaaat 9177684  T
Q  1012 ctatctctaggttaagttatttacattcctatcattatttaaaagttgtgcaatgttgtgattaattcacagcgcg 1087  Q
    |||||| ||| ||||||||||||| || ||||||||||| || |||||||||||||||||||||||||||| ||||    
T  9177685 ctatctttagtttaagttatttacgttactatcattattcaagagttgtgcaatgttgtgattaattcacaccgcg 9177760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 979 - 1098
Target Start/End: Complemental strand, 26660726 - 26660607
Alignment:
Q  979 tgttatttccttatctagtttagaacttcaaatctatctctaggttaagttatttacattcctatcattatttaaaagttgtgcaatgttgtgattaatt 1078  Q
    |||||| ||||| | |||||||||||| ||||||| ||| ||| |||| |||||||  || ||||  | |||||| ||||||||||||||||||||||||    
T  26660726 tgttatctccttgtatagtttagaactccaaatctttctttagtttaaattatttaagttactattgtgatttaagagttgtgcaatgttgtgattaatt 26660627  T
Q  1079 cacagcgcgacaaccgcaat 1098  Q
    |||| || ||||||||||||    
T  26660626 cacaccgtgacaaccgcaat 26660607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 979 - 1098
Target Start/End: Complemental strand, 26766697 - 26766578
Alignment:
Q  979 tgttatttccttatctagtttagaacttcaaatctatctctaggttaagttatttacattcctatcattatttaaaagttgtgcaatgttgtgattaatt 1078  Q
    |||||| ||||| | |||||||||||| ||||||| ||| ||| |||| |||||||  || ||||  | |||||| ||||||||||||||||||||||||    
T  26766697 tgttatctccttgtatagtttagaactccaaatctttctttagtttaaattatttaagttactattgtgatttaagagttgtgcaatgttgtgattaatt 26766598  T
Q  1079 cacagcgcgacaaccgcaat 1098  Q
    |||| || ||||||||||||    
T  26766597 cacaccgtgacaaccgcaat 26766578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 918 - 1000
Target Start/End: Original strand, 32296363 - 32296445
Alignment:
Q  918 ttttcaattaagatagatgaaaatcatatttttactacatacttgattataaattacatactgttatttccttatctagttta 1000  Q
    ||||||||| |||||||||||||||||||||||| |||||| ||||| |||| ||||||| || ||| ||||||| |||||||    
T  32296363 ttttcaattgagatagatgaaaatcatatttttagtacatatttgatcataagttacataatggtatctccttatatagttta 32296445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 935 - 1011
Target Start/End: Original strand, 10117185 - 10117259
Alignment:
Q  935 tgaaaatcatatttttactacatacttgattataaattacatactgttatttccttatctagtttagaacttcaaat 1011  Q
    ||||||||||||||||| |||||| ||||| ||||||||||||   | || |||||||||||||||||||| |||||    
T  10117185 tgaaaatcatatttttagtacatatttgatcataaattacata--ataatctccttatctagtttagaactccaaat 10117259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 839 - 909
Target Start/End: Complemental strand, 8169310 - 8169240
Alignment:
Q  839 aggttttaaaaaatggtccattaccgagaaaaaggcggcgacaaaaagtataggtagccgacgttaccgtt 909  Q
    |||||||||||||  | || |||||||||||||||   |||||||| |||||||||| |||||||||||||    
T  8169310 aggttttaaaaaactgcccgttaccgagaaaaaggtcacgacaaaaggtataggtagtcgacgttaccgtt 8169240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1057 - 1104
Target Start/End: Original strand, 9771928 - 9771975
Alignment:
Q  1057 ttgtgcaatgttgtgattaattcacagcgcgacaaccgcaatctataa 1104  Q
    |||||||||||||||||||||||||| |||||| ||| ||||| ||||    
T  9771928 ttgtgcaatgttgtgattaattcacaacgcgacgaccacaatccataa 9771975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0989 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold0989
Description:

Target: scaffold0989; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 841 - 887
Target Start/End: Complemental strand, 2165 - 2119
Alignment:
Q  841 gttttaaaaaatggtccattaccgagaaaaaggcggcgacaaaaagt 887  Q
    ||||||||||| ||||  |||||||||||||||| ||||||||||||    
T  2165 gttttaaaaaacggtctgttaccgagaaaaaggccgcgacaaaaagt 2119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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