View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2994_low_23 (Length: 258)
Name: NF2994_low_23
Description: NF2994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2994_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 14 - 239
Target Start/End: Complemental strand, 23554363 - 23554141
Alignment:
| Q |
14 |
aaatagttatacacacacactaatcaaagatagaaatcgaaacgtgaacgaatggttgagagacccaagtatatttacctaactatctttaaattataga |
113 |
Q |
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| T |
23554363 |
aaatggttatacacacgcactaatcaaagatagaaatagaaacgtgaacgaatggttgagagacccaagtatatttagccaactatctttaaattataga |
23554264 |
T |
|
| Q |
114 |
atttatcatgttaatcatcataaatagtattatatttgccgttaggaaaaaacacagccttacattagtataaggcattatcactgattcacacaatctt |
213 |
Q |
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|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
23554263 |
atttatcatgttaatcatcataaa---tattatatttgccattaggaaaaaacacagccttacattagtttaaggcattatcactgattcacacaatctt |
23554167 |
T |
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| Q |
214 |
atatatcatcctttatttctaggttc |
239 |
Q |
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|||||||||||||||||||||||||| |
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| T |
23554166 |
atatatcatcctttatttctaggttc |
23554141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 238
Target Start/End: Complemental strand, 23306914 - 23306844
Alignment:
| Q |
170 |
gccttacattagtataaggcattatcactgattcacacaatct--tatatatcatcctttatttctaggtt |
238 |
Q |
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||||||||||||| ||||||||| |||||||||||||| ||| ||||||| | |||||||||||||||| |
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| T |
23306914 |
gccttacattagtttaaggcattgacactgattcacacactcttatatatattagcctttatttctaggtt |
23306844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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