View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2994_low_26 (Length: 247)
Name: NF2994_low_26
Description: NF2994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2994_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 2 - 228
Target Start/End: Original strand, 12125150 - 12125377
Alignment:
| Q |
2 |
gagagcctgtctctgcacagttcagattcttcctaattccacccatttttctattctggttttcnnnnnnn-atactacaattatcgcccgctcttaata |
100 |
Q |
| |
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||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||| | |
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| T |
12125150 |
gagagcctgtctctgcacagttccgactcttcctaattccacccatttttctattctggttttcttctttttatactacaattatcgctcgttcttaaga |
12125249 |
T |
|
| Q |
101 |
gatacaattaatcataatggttgtgactgttcctattggtaaccgcagacagaactgatgttgtttggctttaaggtttgcgtcctttctccaccagttg |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
12125250 |
gatacaattaatcataatggttgtgacttttcctattggtaaccgcagacagaactgatgttgtttggctttaagggttgtgtcctttctccaccagttg |
12125349 |
T |
|
| Q |
201 |
taccttcctggatcgcccttcttggccc |
228 |
Q |
| |
|
||||||||||| |||||||||||||||| |
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| T |
12125350 |
taccttcctgggtcgcccttcttggccc |
12125377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 2 - 228
Target Start/End: Original strand, 4416269 - 4416495
Alignment:
| Q |
2 |
gagagcctgtctctgcacagttcagattcttcctaattccacccatttttctattctggttttcnnnnnnn-atactacaattatcgcccgctcttaata |
100 |
Q |
| |
|
||||| |||||||| |||| ||||||||||||||||||||| | |||||||||| |||||| | |||||||||||| | ||| |||||||| |
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| T |
4416269 |
gagagactgtctctccacaattcagattcttcctaattccaaac-tttttctattttggtttacttctttttatactacaattaacaccccttcttaata |
4416367 |
T |
|
| Q |
101 |
gatacaattaatcataatggttgtgactgttcctattggtaaccgcagacagaactgatgttgtttggctttaaggtttgcgtcctttctccaccagttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||| || |
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| T |
4416368 |
gatacaattaatcataatggttgtgactattcctattggtaaccgctgacagaactgatattgtttggctttaagggttgcgtcctttctccaccagctg |
4416467 |
T |
|
| Q |
201 |
taccttcctggatcgcccttcttggccc |
228 |
Q |
| |
|
||||||||||| | |||| ||||||||| |
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| T |
4416468 |
taccttcctgggttgcccctcttggccc |
4416495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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