View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2994_low_27 (Length: 240)
Name: NF2994_low_27
Description: NF2994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2994_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 49633741 - 49633516
Alignment:
| Q |
1 |
ctctcacctccctcacctccagggttctctactagcctcaccaccccgttcttaaatacccaaacccctgacatgtatttagtcttcaatttctacacaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
49633741 |
ctctcacctccctcacctccagggttctctactagcctcaccaccccgttcttaaatacccaaacccctgacatgtatttattcttcaatttctacacaa |
49633642 |
T |
|
| Q |
101 |
aactattattaagatgatgatgaagaagaaaagtgtacgtacgtgtgtttgtgtttttgcaaccttgctagctagctagctatggctcggatatatataa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
49633641 |
aactattattaagatgatgatgaagaagaaaagtgtacgtacgtgtgtttgtgtttttgtaaccttgctagctagctagctatggctcggatatatataa |
49633542 |
T |
|
| Q |
201 |
tagggtgtgtaatgtgatatatatat |
226 |
Q |
| |
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|||||||||||||||||||||||||| |
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|
| T |
49633541 |
tagggtgtgtaatgtgatatatatat |
49633516 |
T |
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