View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2994_low_29 (Length: 233)
Name: NF2994_low_29
Description: NF2994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2994_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 39318824 - 39319039
Alignment:
| Q |
1 |
ccaaactcaatcatcgaaccaagtcaacaaccttggatccatcctgcttcccaaatgcctccaacgactaaccaaggaccattcactctcaaacttccta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
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| T |
39318824 |
ccaaactcaatcatcgaaccaagtcaacaaccttggatccatcctgcttcccaaatgcctccaacgactaaccaaggaccgttcactctcaaacgtccta |
39318923 |
T |
|
| Q |
101 |
acgacacataatagacaaagatagacattgatggcacaccgcttcgtaaggttcccattcaaacaactaacaactcgaaaatcaagccttcctcacatat |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
39318924 |
acgacacataatagacaaagatagacattgatggcacaccgcttcgtaaggttcccattcaaacaactaacaactcgaaaatcaagccttcctcgcatat |
39319023 |
T |
|
| Q |
201 |
gtatgatgcacaaact |
216 |
Q |
| |
|
||| |||||||||||| |
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|
| T |
39319024 |
gtaagatgcacaaact |
39319039 |
T |
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