View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2994_low_3 (Length: 695)
Name: NF2994_low_3
Description: NF2994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2994_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 510; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 29 - 601
Target Start/End: Original strand, 7098545 - 7099106
Alignment:
| Q |
29 |
cttgattgctaagccattcagctaactgaatctgactaatgtatggtaatcattcttgttttttaaatatttacctctgttgcaacatggatgcatatag |
128 |
Q |
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| T |
7098545 |
cttgattgctaagccattcagctaactgaatctgactaatgtatggtaatcattcttgttttttaaatatttacctctgttgcaacatggatgcatatag |
7098644 |
T |
|
| Q |
129 |
tagacatctttggaattctattttccttactaaaaatgaaccattaacgtagttctggaaaatttgtatgcagaatctgtgcgggatgcaatgctgagat |
228 |
Q |
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| T |
7098645 |
tagacatctttggaattctattttccttactaaaaatgaaccattaacatagttctggaaaatttgtatgcagaatctgtgcgggatgcaatgctgagat |
7098744 |
T |
|
| Q |
229 |
tggccatggaagatttttaaattgcatggaaggtgactggcatccacaatgcttcacctgtcaatgctgtcatgcatgccatctgccaatcactgattat |
328 |
Q |
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| T |
7098745 |
tggccatggaagatttttaaattgcatggaaggtgactggcatccacaatgcttcacctgt---------catgcatgccatctgccaatcactgattat |
7098835 |
T |
|
| Q |
329 |
gaggttagagtttctttttctgtgatgccaacacaaaactgagtttaatcaaaacaagttgaaactttactcagcaattcattagttagggttttcaaat |
428 |
Q |
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| T |
7098836 |
gaggttagagtttctttttctgtgatgccgacacaaaactgagtttaatcaaaacaagttgaaactttactcagcaattcattagttagggttttcaaat |
7098935 |
T |
|
| Q |
429 |
tatgtatcttttttctttgtctatctcaatacgattatgaacaatacttggatatccatttgttcctttacagttttccatgtctagcgaccgaccttac |
528 |
Q |
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| T |
7098936 |
tatgtatcttttttctttg--tatctcaatacgattatgaataatacttggatatacatttgttcctttacagttttccatgtctagcaaccgaccttac |
7099033 |
T |
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| Q |
529 |
cataaatcctgctacagggagaagtatcacccaagatgtgatgtttgcaagaattttgtaagtatctcagcag |
601 |
Q |
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| T |
7099034 |
cataaatcctgctacagggagaagtatcacccaagatgtgatgtttgcaagaattttgtaagtatctcagcag |
7099106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 197 - 678
Target Start/End: Original strand, 7091590 - 7092064
Alignment:
| Q |
197 |
tgcagaatctgtgcgggatgcaatgctgagattggccatggaagatttttaaattgcatggaaggtgactggcatccacaatgcttcacctgtcaatgct |
296 |
Q |
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| T |
7091590 |
tgcagaatctgtgctggatgcaatgctgagattggccatggaagatttttaagttgcatgggaggggtctggcatccacaatgcttc------caatgc- |
7091682 |
T |
|
| Q |
297 |
gtcatgcatgccatctgccaatcactgattatgaggttagagtttctttttctgtgatgccaac---acaaaactgagtttaatcaaaacaagttgaaac |
393 |
Q |
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| T |
7091683 |
--catgcttgccatctgccaatcactgattatgaggttagagtttcttctg-tgtgatgcttgcttgacacaactgagtttaatcaaaacaagttgaaac |
7091779 |
T |
|
| Q |
394 |
tttactcagcaattcattagttagggttttcaaattatgtatcttttttctttgtctatctcaatacgattatgaacaatacttggatatccatttgttc |
493 |
Q |
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||||||| | |||| |||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
7091780 |
tttactcggaaatttattatttagggttttcaaattatgtatcctttttctttgcctatctcaatacgattatgaataatacttggatatccatttgttc |
7091879 |
T |
|
| Q |
494 |
ctttacagttttccatgtctagcgaccgaccttaccataaatcctgctacagggagaagtatcacccaagatgtgatgtttgcaagaattttgtaagtat |
593 |
Q |
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| T |
7091880 |
ctttacagttttccatgtctagcaaccgtccttaccataaatcctgctacagggagaagcatcacccaagatgtgatgtttgcaagaattttgtaagtat |
7091979 |
T |
|
| Q |
594 |
ctcagcaggagtctttgacttgcagttgtctattagagtttttcaatttactatcaaagttttctcttatcatggacatgctttt |
678 |
Q |
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| T |
7091980 |
ctcagcaggaatctttcacttgcagttgtctattaaagtttttcaatttactatcaaagtagtctcttatcatggacatgctttt |
7092064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 597 - 678
Target Start/End: Original strand, 7104101 - 7104182
Alignment:
| Q |
597 |
agcaggagtctttgacttgcagttgtctattagagtttttcaatttactatcaaagttttctcttatcatggacatgctttt |
678 |
Q |
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| T |
7104101 |
agcaggagtctttcacttgcagttgtctattagagtttttcaatttactatcaaagttttctcttatcatggacatgctttt |
7104182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 498 - 592
Target Start/End: Complemental strand, 33407797 - 33407703
Alignment:
| Q |
498 |
acagttttccatgtctagcgaccgaccttaccataaatcctgctacagggagaagtatcacccaagatgtgatgtttgcaagaattttgtaagta |
592 |
Q |
| |
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| T |
33407797 |
acagtattccatgtctgggaatcgtccttaccataaatcatgctataaggagctgcatcacccaaggtgtgatgtttgcaagatctttgtaagta |
33407703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 197 - 279
Target Start/End: Complemental strand, 33408083 - 33408001
Alignment:
| Q |
197 |
tgcagaatctgtgcgggatgcaatgctgagattggccatggaagatttttaaattgcatggaaggtgactggcatccacaatg |
279 |
Q |
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| T |
33408083 |
tgcagaatctgcgctggatgcaatgtcgagattgggcatggaaggtttttgagttgcatgggagctgtatggcatccagaatg |
33408001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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