View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2994_low_5 (Length: 553)
Name: NF2994_low_5
Description: NF2994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2994_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 252 - 534
Target Start/End: Original strand, 40800724 - 40801003
Alignment:
| Q |
252 |
gttccacagaggaagccacttcttctaacggaacaaattacatgcaataatatttcttgatgattgaagaactgtttctgtattctatttcctatttaat |
351 |
Q |
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| T |
40800724 |
gttccatagaggaagccacttcttctaacggtacgaattacatgcaata---tttcttgatgattgaagaactgtttttgtattctatttcctttttact |
40800820 |
T |
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| Q |
352 |
cttcttggttaatacaaattcagatataatgggaaatgttccgcattgatagataagctcctcatatataggatggttgccaaatttttctccatattat |
451 |
Q |
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| T |
40800821 |
cttcttggttaatacaaattcagatataatgggaaatgttccgcattgatagagaagctcctcatatataggatgactgccaaatttttctccatattat |
40800920 |
T |
|
| Q |
452 |
ctctcggtctctttctaattcttttatgttgttgtttgcatgtgatttgagtccttattccataattgtcgcaaagggtgaaa |
534 |
Q |
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| T |
40800921 |
ctctcggtctctttctaatccttttatgttgttgtttgcatgtgatttgagtccttattccataattgtcgcaaagggtgaaa |
40801003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 40799239 - 40799351
Alignment:
| Q |
1 |
aaaagggaggaagaagatggaacaacttgatgtagtctattttcctccaccattaattaaagtgtttaaggtaaatgcaattatataggctattgtttcg |
100 |
Q |
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| T |
40799239 |
aaaagggaggaagaagatggaacaacttgatgtagcctattttcctcgaccattaattaaagtgtttaaggtaaatgcaattatataggctattgtttct |
40799338 |
T |
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| Q |
101 |
tatttttatcttt |
113 |
Q |
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| T |
40799339 |
tatttttatcttt |
40799351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 135 - 256
Target Start/End: Original strand, 40799597 - 40799719
Alignment:
| Q |
135 |
atttccttttaaatttccttcaatttacctttactacatttacattaaacaattgcatatacatattccctatttttg-ttttaaaaatcatattccttc |
233 |
Q |
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| T |
40799597 |
atttccttttaaatttccttcaatttacctttactacatttactttaaacaattgcatacacgcattccttatttttgcttttaaaaatcatattccttc |
40799696 |
T |
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| Q |
234 |
tttgttgtgttaattgttgttcc |
256 |
Q |
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| T |
40799697 |
tttgttgtgttaattgttgttcc |
40799719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 148 - 398
Target Start/End: Complemental strand, 2249574 - 2249326
Alignment:
| Q |
148 |
tttccttcaatttacctttactacatttacattaaacaattgcatatacatattccctatttttgttttaaa-aatcatattccttctttgttgtgttaa |
246 |
Q |
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| T |
2249574 |
tttccttcaatttaacattaccatatttactataaacacttgcatacacgtgttccttatcttagttgtaaagaagtgtatttcttctttgttgttttaa |
2249475 |
T |
|
| Q |
247 |
ttgttgttccacagaggaagccacttcttctaacggaacaaattacatgcaataatatttcttgatgattgaagaactgtttctgtattctatttcctat |
346 |
Q |
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|| |||||||| | ||||||||||||||| | | || ||||| ||||||| |||||| |||||||||| ||| |||||||| |||||||| ||| |
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| T |
2249474 |
tttttgttccataaaggaagccacttcttggagcataatgaattatatgcaatt---tttcttcatgattgaagcactatttctgtactctatttcttat |
2249378 |
T |
|
| Q |
347 |
ttaatcttcttggttaatacaaattcagatataatgggaaatgttccgcatt |
398 |
Q |
| |
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|| |||||| |||||||| |||||| |||||||||| |||||||||||||| |
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| T |
2249377 |
ctactcttctcggttaatataaattctgatataatggaaaatgttccgcatt |
2249326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 472 - 534
Target Start/End: Complemental strand, 2249080 - 2249018
Alignment:
| Q |
472 |
cttttatgttgttgtttgcatgtgatttgagtccttattccataattgtcgcaaagggtgaaa |
534 |
Q |
| |
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| T |
2249080 |
cttttatgttgttttctccatgtcatttgagtcctaatttcataattgttgcaaagggtgaaa |
2249018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 217 - 275
Target Start/End: Complemental strand, 51035649 - 51035591
Alignment:
| Q |
217 |
aaaaatcatattccttctttgttgtgttaattgttgttccacagaggaagccacttctt |
275 |
Q |
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| T |
51035649 |
aaaaaacatattccttctttgtagtgttaatttttgttccatagaggaagccacttctt |
51035591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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