View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2994_low_6 (Length: 553)
Name: NF2994_low_6
Description: NF2994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2994_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 13 - 534
Target Start/End: Complemental strand, 43772105 - 43771584
Alignment:
| Q |
13 |
aatattaatcaatattcagcgcagaaggatcccaacaatatttaacgataaatggtacaaatcatagaaaactgagaattgaaataacaacctgaacaga |
112 |
Q |
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| T |
43772105 |
aatattaatcaatattcagctcagaaggatcccaacaatatttaacgataaatggtacaaatcatagaaaactgagaattgaaataacaacctgaacaga |
43772006 |
T |
|
| Q |
113 |
tgccatgccaaagatgcctccgatcacagaccggactgcaggatgtatgtccagttttcttgttgacaaccataaggcactcactgaaattagggttgca |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43772005 |
tgccatgccaaagatgcctccgatcacagaccggactgcaggatgtatgtccagttttcttgttgacaaccataaggcactcactgaaattagggttgca |
43771906 |
T |
|
| Q |
213 |
gttgcaagaacccggtgattgagctgttaaaacaaaacatgtattaaaaatttatgttgttaaatttccacggattggcaaaatggcagtccagtttaag |
312 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
43771905 |
gttgcaagaatccggtgattgagctgttaaaacaaaacatgtattaaaaatttatgttgttaaattcccacggattggcaaaatggcggtccagtttaag |
43771806 |
T |
|
| Q |
313 |
tttcnnnnnnntttaagtaacaaaggaaagaactgctgacatctgagatgtaaacattgtctgcaaaaccataattacaaaaataaatgtactgctaatt |
412 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43771805 |
tttcaaaaaaatttaagtaacaaaggaaagaactgctgacatctgagatgtaaacattgtctgcaaaaccataattacaaaaataaatgtactgctaatt |
43771706 |
T |
|
| Q |
413 |
tactaccttcaaaaaactactttccaaataaattaaaggacaaccagatcacaattcaagaaacaaaggtactgcaatttttaacttttcagcaataaat |
512 |
Q |
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|||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43771705 |
tactaccttcaaaaaagtactttccaaataaataaaaggacaaccagatcacaattcaagaaacaaaggtactgcaatttttaacttttcagcaataaat |
43771606 |
T |
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| Q |
513 |
tagcatagataatacctgtaca |
534 |
Q |
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|||||||||||||||||||||| |
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| T |
43771605 |
tagcatagataatacctgtaca |
43771584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 106; Significance: 9e-53; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 89 - 258
Target Start/End: Complemental strand, 42358472 - 42358303
Alignment:
| Q |
89 |
aattgaaataacaacctgaacagatgccatgccaaagatgcctccgatcacagaccggactgcaggatgtatgtccagttttcttgttgacaaccataag |
188 |
Q |
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||||||| ||| |||||| | ||||||||||||||||| |||||||||||||| || ||||||||||||||||| || ||||||||||||| ||||||| |
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| T |
42358472 |
aattgaagtaataacctgtagagatgccatgccaaagacacctccgatcacagatcgcactgcaggatgtatgtctagctttcttgttgacagccataag |
42358373 |
T |
|
| Q |
189 |
gcactcactgaaattagggttgcagttgcaagaacccggtgattgagctgttaaaacaaaacatgtatta |
258 |
Q |
| |
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|||||||| |||||||| |||||||||||||| | ||||||||||||||||||||||||||| ||||||| |
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| T |
42358372 |
gcactcaccgaaattagagttgcagttgcaaggatccggtgattgagctgttaaaacaaaacttgtatta |
42358303 |
T |
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