View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2994_low_7 (Length: 488)
Name: NF2994_low_7
Description: NF2994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2994_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 11 - 474
Target Start/End: Complemental strand, 44816140 - 44815670
Alignment:
| Q |
11 |
cacagacgacggtgtttttgttgatgggaacaagacaaacaaccatcacaacaagaaaggaataattgacaagataaaggataagcttcctggaacacac |
110 |
Q |
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| T |
44816140 |
cacagacgacggtgtttttgttgatgggaacaagacaaacaaccatcacaacaagaaaggaataattgacaagataaaggagaagcttcctggaacacac |
44816041 |
T |
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| Q |
111 |
catcataaataactagtttttatttattattgtttacatgatgtgtgtgtgtatcgtttattacttaagattgcaagtatttgtgttgttttgtacatga |
210 |
Q |
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| T |
44816040 |
catcataaataactagtttttatttattattgtttacatca--tgtgtgtgtatcgtttattacttaagattgcaagtatttgtgttgttttttacatga |
44815943 |
T |
|
| Q |
211 |
tgcatgtgtatcg-tttactcaaccagtttaataaattacttgtgttcgtgttgtgtgtttgagtatatcttagtaaactagtattattatgttac---- |
305 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44815942 |
tgcatgtgtatcgttttactcaaccagtttaataaattacttgtgttcgtgttgtgtgtttgagtatatcttagtaaactagtattattatgttacacac |
44815843 |
T |
|
| Q |
306 |
----------acatgaaaatttgataacaataatttagatgagtttataaggcaattctcattttctaaactaggctttctaatatggtattagaattag |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
44815842 |
gaatatttttacatgaaaatttgataacaataatttagatgagtttataaggcaattctcattttccaaactaggctttctaatatggtattagaattag |
44815743 |
T |
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| Q |
396 |
aatttattgttcatgatcacccaccatttagatctagatccattcattcataatgagtggtagattttgtcttatatat |
474 |
Q |
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|||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
44815742 |
aatttattgttcatgatcacccaccatt------tagatccattcactcataatgagtggtagattttgtcttatatat |
44815670 |
T |
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