View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2994_low_8 (Length: 448)
Name: NF2994_low_8
Description: NF2994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2994_low_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 18 - 440
Target Start/End: Complemental strand, 700364 - 699953
Alignment:
| Q |
18 |
atcttttcttgtacttaattctccttttatgccattattatggtttagcttcattcaaggtctattttcaataaaccatttactaagtcttccaagatca |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
700364 |
atcttttcttgtacttaattctccttttatgccattattatggtttagcttcattcaaggtctat------------atatactaagtcttccaagatca |
700277 |
T |
|
| Q |
118 |
aactcatttttatctcttttaaaacaactcagtttctcttctcttcattcatccaataaaccatttactctttctttccnnnnnnnnnnnnnnctttc-c |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |
|
|
| T |
700276 |
aactcatttttatctcttttaaaacaactcagtttctcttctcttcattcatccaataaaccatttactctttctttctttttttttttttttttttctc |
700177 |
T |
|
| Q |
217 |
tctctttacctctctctcttatcttcatccaatcaaaattcttgtcacctattttcaattcttcatcatcatgttttctttccaaaatttctggcaacta |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
700176 |
tctctttacctctctctcttatcttcatccaatcaaaattcttgtcacctattttcaattcttcatcatcatgttttctttccaaaatttctggcaacta |
700077 |
T |
|
| Q |
317 |
ctgctccaatgtctcacaggaaaaacaatactctactctgaaaaggaatcattgttcaaacaatcaacatccaactcaacttggctcatatccgtgtcaa |
416 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
700076 |
ctgctccaatatctcacaggaaaaacaatactctactctgaaaaggaatcattgttcaaacaatcaacatccaactcaacttggctcatatccgtgtcaa |
699977 |
T |
|
| Q |
417 |
gatgagttagcagcgtttcttctc |
440 |
Q |
| |
|
||||||||||| |||||||||||| |
|
|
| T |
699976 |
gatgagttagccgcgtttcttctc |
699953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 18 - 440
Target Start/End: Complemental strand, 768663 - 768252
Alignment:
| Q |
18 |
atcttttcttgtacttaattctccttttatgccattattatggtttagcttcattcaaggtctattttcaataaaccatttactaagtcttccaagatca |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
768663 |
atcttttcttgtacttaattctccttttatgccattattatggtttagcttcattcaaggtctat------------atatactaagtcttccaagatca |
768576 |
T |
|
| Q |
118 |
aactcatttttatctcttttaaaacaactcagtttctcttctcttcattcatccaataaaccatttactctttctttccnnnnnnnnnnnnnnctttc-c |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |
|
|
| T |
768575 |
aactcatttttatctcttttaaaacaactcagtttctcttctcttcattcatccaataaaccatttactctttctttctttttttttttttttttttctc |
768476 |
T |
|
| Q |
217 |
tctctttacctctctctcttatcttcatccaatcaaaattcttgtcacctattttcaattcttcatcatcatgttttctttccaaaatttctggcaacta |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
768475 |
tctctttacctctctctcttatcttcatccaatcaaaattcttgtcacctattttcaattcttcatcatcatgttttctttccaaaatttctggcaacta |
768376 |
T |
|
| Q |
317 |
ctgctccaatgtctcacaggaaaaacaatactctactctgaaaaggaatcattgttcaaacaatcaacatccaactcaacttggctcatatccgtgtcaa |
416 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
768375 |
ctgctccaatatctcacaggaaaaacaatactctactctgaaaaggaatcattgttcaaacaatcaacatccaactcaacttggctcatatccgtgtcaa |
768276 |
T |
|
| Q |
417 |
gatgagttagcagcgtttcttctc |
440 |
Q |
| |
|
||||||||||| |||||||||||| |
|
|
| T |
768275 |
gatgagttagccgcgtttcttctc |
768252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 212 - 440
Target Start/End: Original strand, 36961753 - 36961981
Alignment:
| Q |
212 |
tttcctctctttacctctctctcttatcttcatccaatcaaaattcttgtcacctattttcaattcttcatcatcatgttttctttccaaaatttctggc |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36961753 |
tttcctctctttacctctctctcttatcttcatccaatcaaaattcttgtcacctattttcaattcttcatcatcatgttttctttccaaaatttctggc |
36961852 |
T |
|
| Q |
312 |
aactactgctccaatgtctcacaggaaaaacaatactctactctgaaaaggaatcattgttcaaacaatcaacatccaactcaacttggctcatatccgt |
411 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36961853 |
aactactgctccaatatctcacaggaaaaacaatactctactctgaaaaggaatcattgttcaaacaatcaacatccaactcaacttggctcatatccgt |
36961952 |
T |
|
| Q |
412 |
gtcaagatgagttagcagcgtttcttctc |
440 |
Q |
| |
|
|||||||||||||||| |||||||||||| |
|
|
| T |
36961953 |
gtcaagatgagttagccgcgtttcttctc |
36961981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 18 - 184
Target Start/End: Original strand, 36959738 - 36959892
Alignment:
| Q |
18 |
atcttttcttgtacttaattctccttttatgccattattatggtttagcttcattcaaggtctattttcaataaaccatttactaagtcttccaagatca |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
36959738 |
atcttttcttgtacttaattctccttttatgccattattatggtttagcttcattcaaggtctat------------atatactaagtcttccaagatca |
36959825 |
T |
|
| Q |
118 |
aactcatttttatctcttttaaaacaactcagtttctcttctcttcattcatccaataaaccattta |
184 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36959826 |
aactcatttttatctcttttaaaacaactcagtttctcttctcttcattcatccaataaaccattta |
36959892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 18129 times since January 2019
Visitors: 3794