View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3120_low_7 (Length: 309)
Name: NF3120_low_7
Description: NF3120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3120_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 22 - 282
Target Start/End: Complemental strand, 51805023 - 51804763
Alignment:
| Q |
22 |
cagaggaacaagatttcaggacaattaacaccaacaatctctagagcttataaccttgtcaaaattgatttcagttataactttctttctggtccaattc |
121 |
Q |
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| T |
51805023 |
cagaggaacaagatttcaggacaaataacaccaacaatctctagtgcttataaccttgtcaaaattgatttcagttataactttctttctggtccaattc |
51804924 |
T |
|
| Q |
122 |
cttctgagattggtaaccttagaaagcttaacttgcttatgctacaagcaaacaagctgaactcttctattcctgattcattctcttccttggaatcact |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51804923 |
cttctgagattggtaaccttagaaagcttaacttgcttatgctacaagcaaacaagctgaactcttctattcctgattcattctcttccttggaatcact |
51804824 |
T |
|
| Q |
222 |
caaccttctagatctttccagtaatctcttaaccggaaacatccctgaaagcctctctgtg |
282 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51804823 |
caaccttctagatctttccagtaatctcttaaccggaaacatccctgaaagcctctctgtg |
51804763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 34 - 180
Target Start/End: Original strand, 20017733 - 20017879
Alignment:
| Q |
34 |
atttcaggacaattaacaccaacaatctctagagcttataaccttgtcaaaattgatttcagttataactttctttctggtccaattccttctgagattg |
133 |
Q |
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|||||| |||| |||| || ||||||||| ||||| || ||||||| ||||||||||||||||||| ||||| | ||||||||| ||||| | |||| |
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| T |
20017733 |
atttcaagacatataactccgacaatctcttgagctattagccttgtcgaaattgatttcagttataaatttctctatggtccaatcccttcataaattg |
20017832 |
T |
|
| Q |
134 |
gtaaccttagaaagcttaacttgcttatgctacaagcaaacaagctg |
180 |
Q |
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| T |
20017833 |
gtaaccttagaaaacttaatttgcttgtgttacaagggaacaagctg |
20017879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 219 - 282
Target Start/End: Original strand, 20017900 - 20017963
Alignment:
| Q |
219 |
actcaaccttctagatctttccagtaatctcttaaccggaaacatccctgaaagcctctctgtg |
282 |
Q |
| |
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|||||||||||| |||||||||| ||||||||||| | |||||||| |||||||||||||| |
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| T |
20017900 |
actcaaccttcttgatctttccaacaatctcttaactgagaacatccccaaaagcctctctgtg |
20017963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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