View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3141A-Insertion-1 (Length: 787)
Name: NF3141A-Insertion-1
Description: NF3141A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3141A-Insertion-1 |
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Alignment Details
Target: chr8 (Bit Score: 539; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 8 - 582
Target Start/End: Original strand, 14604742 - 14605316
Alignment:
| Q |
8 |
aaatctgcaacaactcatgagatgtaccataaactagcatgtgttaaacttgatctgatgtttacgaagtactagcaattaaggtgtaaacttgtgctac |
107 |
Q |
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| T |
14604742 |
aaatctgcaacaactcatgagatgtaccataaactagcatgtgttaaacttgatctgatgtttacgaagtactagcaattaaggtgtaaacttgtgctac |
14604841 |
T |
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| Q |
108 |
tcttatttgctagctagagttaaacattttcaataaacaagattttagtatagggatgaatgtttagagaattaatttaaattgaaaatagcaaagatgt |
207 |
Q |
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| T |
14604842 |
tcttatttgctagctagagttaaacattttcaataaacaagattttagtatagggatgaatgtttagagaattaatttaaattgaaaatagcaaagatgt |
14604941 |
T |
|
| Q |
208 |
taaatttgaatttcaaagatacatatgtttgttgcctagagctggtacctgcttaaaatctgtacaatatgagaatcagcgcgtgcatcatctagaagtt |
307 |
Q |
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| T |
14604942 |
taaatttgaatttcaaagatacatatgtttgttgcctagagctggtacctgcttaaaatctgtacaatatgagaatcagcgcatgcatcatctagaagtt |
14605041 |
T |
|
| Q |
308 |
gtagtacagtttattatgacatcattggtcaccacacattgaatgtgataaatcttcccccactcttcacctttaggtttcatgtatcgttctttgacaa |
407 |
Q |
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| T |
14605042 |
gtagttcagtttattatgacatcattgatcaccaaacattgaatgtgagaaatcttcccccactcttcacctttaggtttcatgtatcgttctttgacaa |
14605141 |
T |
|
| Q |
408 |
cagaaggaccacaaattgctagccttgaaatggatttaggcaggccctccaccagtaagcattgaaggttggggcaattagagagacgcaatgattcaag |
507 |
Q |
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| T |
14605142 |
cagaaggaccacaaattgctagccttgaaatggatttaggcaggccctccaccggtaagcattgaaggttggggcaattagagagacacaaagattcaag |
14605241 |
T |
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| Q |
508 |
agaggagaggttgcagagaccctcgtaatccaattttttaagattcatttcaagattactacactctctgatata |
582 |
Q |
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| T |
14605242 |
agaggagaggttgcagaaaccctcgtaatccaattttttaagattcatttcaagattactacactctctgatata |
14605316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 592 - 785
Target Start/End: Original strand, 14605303 - 14605498
Alignment:
| Q |
592 |
cactctctgatatacagacgtgtaaggctacaatgatgctcatgtgaaatcatttcaagattactacacttagtcaaactgaggcactcgagttttggga |
691 |
Q |
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| T |
14605303 |
cactctctgatatacagacgtgtaaggctacaatgatgctcctgtgaaatcatttcaagattactacacttagtcaaactgaggcactcgagttttggga |
14605402 |
T |
|
| Q |
692 |
agaagtccagatgaaaggtccaaatattcaagaaagttgta-gaacagcctagaggaatgttcatagttgggg-acgcataatcattagtgtttca |
785 |
Q |
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| T |
14605403 |
agaagtccagatgaaaggtccaaatattcaagaaagttgtaggaacagcctagaggaatgttcatagttggggaacgcataatcattagtgtttca |
14605498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 339 - 552
Target Start/End: Complemental strand, 14314247 - 14314034
Alignment:
| Q |
339 |
ccacacattgaatgtgataaatcttcccccactcttcacctttaggtttcatgtatcgttctttga-caacagaaggaccacaaattgctagccttgaaa |
437 |
Q |
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||||||||||||||||| ||||||||||||| |||||||| |||||||||||| |||| | ||| | ||||| | || || ||| ||| ||||| |
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| T |
14314247 |
ccacacattgaatgtgagaaatcttcccccaatcttcaccattaggtttcatgcatcgctgtttaagcaacaaacaatccgtaacttg-tagagctgaaa |
14314149 |
T |
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| Q |
438 |
tggatttaggcaggccctccaccagtaagcattgaaggttggggcaattagagagacgcaatgattcaagagaggagaggttgcagagaccctcgtaatc |
537 |
Q |
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| T |
14314148 |
tggttttaggcagtccctccactggtaagcattgaaggctggggcaaccactaagaatcaaatcttcaagagaggagaggtggcagagacctttgtggtc |
14314049 |
T |
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| Q |
538 |
caattttttaagatt |
552 |
Q |
| |
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| T |
14314048 |
cagttttttaagatt |
14314034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 76 - 151
Target Start/End: Complemental strand, 14314615 - 14314541
Alignment:
| Q |
76 |
gtactagcaattaaggtgtaaacttgtgctactcttatttgctagctagagttaaacattttcaataaacaagatt |
151 |
Q |
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| T |
14314615 |
gtactagcaattaaggtgcaa-cttgtgctactattgtttgcaaactaaagtgaaacatttccaataaacaagatt |
14314541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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