View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3141A-Insertion-11 (Length: 699)
Name: NF3141A-Insertion-11
Description: NF3141A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3141A-Insertion-11 |
 | |
|
| [»] scaffold0050 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 577; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 577; E-Value: 0
Query Start/End: Original strand, 8 - 660
Target Start/End: Original strand, 21271686 - 21272343
Alignment:
| Q |
8 |
ttattgactataaataccaaccttgagagcattcttagggcatctcataagcaatctaaccctagtctgatagtcctactttctgcactacctcatttaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
21271686 |
ttattgactataaataccaaccttgagagcattcttagggcatctcataaacaatctaaccctagtctgatagtcgtactttcttcactacctcatttaa |
21271785 |
T |
|
| Q |
108 |
aaaaccataacacataacacataaaatctgagtcgcatccttctccactacctcatcgccatgaagaccgaatcctcaaatcacgacaccgtcgaggcga |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
21271786 |
aaaaccataacacataacacataaaatctgagtcgcatccttctccactacctcatcgccatgatgaccgaatcctcaaatcacgacaccatcgaggcga |
21271885 |
T |
|
| Q |
208 |
taaaaattcaaatcgcacaaaaccaacatcaacatcaacttcaatttttctacggagcaatcagatgactaacataaagctagccagattgatcaagttg |
307 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
21271886 |
taaaaattcaaatctcacaaaaccaacatcaacatcaacttcaatttttctacggagcaatcagatgactaacataaagctggccagattgatcaagttg |
21271985 |
T |
|
| Q |
308 |
ttctttaattacgagaataatccaggtgccaaaatcctatgttacgt--gaatacgcttgattaggcggccttgttcagaaatattgatcctatgaagat |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21271986 |
ttctttaattacgagaataatccaggtgccaaaatcccatgttacgtgagaatacgcttgattaggcggccttgttcagaaatattgatcctatgaagat |
21272085 |
T |
|
| Q |
406 |
gacgccagatacctcgaaatccaggttttatgagtccaatattattcaagtgtttat-----cacgtggtgctttaattttgaattcatatttgccatat |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21272086 |
gacgccagatacctcgaaatccaggttttatgagtccaatattattcaagtgtttgtcgatgcacgtggtgctttaattttgaattcatatttgccatat |
21272185 |
T |
|
| Q |
501 |
ttaaattgatcagcacatgataccttgaaaaattccaaaaggcacttaatcctatcggcagtgatattaagtggttttgtttttcaatctaaattgcctt |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |
|
|
| T |
21272186 |
ttaaattgatcagcacatgataccttgaaaaattccaaaaggcacttaatcctatcggcagtgatattaagtggttttg-ttttcaatctaaattgcc-t |
21272283 |
T |
|
| Q |
601 |
ttgttttgacatattttcaagtcgagtcattggaattattcatagtggaaaatcagcttt |
660 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21272284 |
ttgttttgacatattttcaagtcgagtcattggaattattcatagtggaaaatcagcttt |
21272343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0050 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 50
Target Start/End: Complemental strand, 76103 - 76065
Alignment:
| Q |
12 |
tgactataaataccaaccttgagagcattcttagggcat |
50 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
76103 |
tgactataaatactaaccttgagagcattcttagggcat |
76065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 42
Target Start/End: Original strand, 15968107 - 15968140
Alignment:
| Q |
9 |
tattgactataaataccaaccttgagagcattct |
42 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
15968107 |
tattgactataaataccaaccttgagagcattct |
15968140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 6807814 - 6807865
Alignment:
| Q |
15 |
ctataaataccaaccttgagagcattcttagggcatctcataagcaatctaa |
66 |
Q |
| |
|
|||||||||| ||||||||||||| ||| |||||||||||||| || ||||| |
|
|
| T |
6807814 |
ctataaatactaaccttgagagcactctcagggcatctcataaacagtctaa |
6807865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 10815751 - 10815677
Alignment:
| Q |
154 |
actacctcatcgcc-atgaagaccgaatcctcaaatcacgacaccgtcgaggcgataaaaattcaaatcgcacaa |
227 |
Q |
| |
|
|||||||||||||| |||| || ||||||||| |||||||| ||||| |||| || ||| |||||||||||||| |
|
|
| T |
10815751 |
actacctcatcgcccatgatgatcgaatcctccgatcacgacgccgtcaaggctatgaaacttcaaatcgcacaa |
10815677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 15926772 - 15926736
Alignment:
| Q |
15 |
ctataaataccaaccttgagagcattcttagggcatc |
51 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
15926772 |
ctataaataccacccttgagagcattctcagggcatc |
15926736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 162 - 228
Target Start/End: Original strand, 23693061 - 23693127
Alignment:
| Q |
162 |
atcgccatgaagaccgaatcctcaaatcacgacaccgtcgaggcgataaaaattcaaatcgcacaaa |
228 |
Q |
| |
|
||||||| || |||||||||||| |||||||| ||||| |||| || ||| ||||||||||||||| |
|
|
| T |
23693061 |
atcgccacgatgaccgaatcctccgatcacgacgccgtcaaggctatgaaacttcaaatcgcacaaa |
23693127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 27073765 - 27073818
Alignment:
| Q |
13 |
gactataaataccaaccttgagagcattcttagggcatctcataagcaatctaa |
66 |
Q |
| |
|
|||||||||||||| ||||||||||||||| | ||||||| |||| || ||||| |
|
|
| T |
27073765 |
gactataaataccacccttgagagcattctcaaggcatctaataatcagtctaa |
27073818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 16452 times since January 2019
Visitors: 3768