View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3141A-Insertion-12 (Length: 831)

Name: NF3141A-Insertion-12
Description: NF3141A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3141A-Insertion-12
NF3141A-Insertion-12
[»] chr5 (30 HSPs)
chr5 (383-831)||(1163360-1163811)
chr5 (6-325)||(1162984-1163302)
chr5 (460-831)||(1849925-1850287)
chr5 (383-699)||(3299652-3299965)
chr5 (383-699)||(3392545-3392858)
chr5 (61-300)||(40418824-40419063)
chr5 (183-311)||(3300024-3300147)
chr5 (183-311)||(3392917-3393040)
chr5 (542-699)||(40418417-40418571)
chr5 (713-813)||(3299512-3299617)
chr5 (713-813)||(3392405-3392510)
chr5 (713-813)||(40418262-40418364)
chr5 (713-813)||(39879793-39879895)
chr5 (572-662)||(38987873-38987963)
chr5 (572-662)||(39726592-39726682)
chr5 (713-813)||(38987684-38987786)
chr5 (713-813)||(39726397-39726499)
chr5 (572-662)||(39879988-39880078)
chr5 (257-311)||(1850390-1850444)
chr5 (219-300)||(38988246-38988336)
chr5 (183-300)||(39880369-39880495)
chr5 (587-644)||(39169041-39169098)
chr5 (392-487)||(38988048-38988140)
chr5 (716-779)||(39399872-39399937)
chr5 (398-487)||(40418626-40418712)
chr5 (716-813)||(39168825-39168924)
chr5 (392-487)||(39726767-39726863)
chr5 (596-638)||(39400042-39400084)
chr5 (415-487)||(39880163-39880232)
chr5 (87-124)||(39400512-39400549)
[»] chr4 (7 HSPs)
chr4 (7-300)||(25911510-25911821)
chr4 (579-699)||(25912122-25912239)
chr4 (713-813)||(25912295-25912397)
chr4 (392-462)||(44444435-44444505)
chr4 (392-487)||(25911942-25912034)
chr4 (716-779)||(44444772-44444837)
chr4 (198-263)||(44444207-44444272)


Alignment Details
Target: chr5 (Bit Score: 399; Significance: 0; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 383 - 831
Target Start/End: Original strand, 1163360 - 1163811
Alignment:
Q  383 gcatcttccttgtttttgttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtagatcatcatccatcaagcaaatcctcc 482  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1163360 gcatcttccttgtttttgttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtagatcatcatccatcaagcaaatcctcc 1163459  T
Q  483 aatggnnnnnnnggtctataaaagggggatctgaagagtgggccagatggatggcagtaggttggatttcggtagattgctctttggtcgaagaggagtt 582  Q
    |||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1163460 aatggaaaaaaaggtctataaaagggggatctgaagagtgggccagatggatggcagtaggttggatttcggtagattgctctttggtcgaagaggagtt 1163559  T
Q  583 tagggtcttgttgtagatcttttaagaagagttgataaccagattcccacttatcctgaacaggaacaactctaccattctcctctttagcaaaactaat 682  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1163560 tagggtcttgttgtagatcttttaagaagagttgataaccagattcccacttatcctgaacaggaacaactctaccattctcctctttagcaaaactaat 1163659  T
Q  683 cttggtaatcaaaatgggatctccttcaagcaggtcataaccaagagcatggtcaccggg-tttaaaatacgacc-agatgagtcctgatttgaaaagtg 780  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  1163660 cttggtaatcaaaatgggatctccttcaggcaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagtg 1163759  T
Q  781 tgattattatttccaatatctttgacacgagc-actagggcattagctaaac 831  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  1163760 tgattattatttccaatatctttgacacgagcaactatggcattagctaaac 1163811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 6 - 325
Target Start/End: Original strand, 1162984 - 1163302
Alignment:
Q  6 catccagcacatgaatgaatcccatgtaaaaggtagtactataccacaaacaagcaactgtttaaaatttacgaaacagatatttacatagcagagaaga 105  Q
    ||||||||||||||| |||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  1162984 catccagcacatgaacgaatcc-atataaaaggtagtactataccacaaacaaacaactgtttaaaatttacgaaacagatatttacatagcagagaaga 1163082  T
Q  106 tcaaaccaatgcatattagctgcttacctgcatctgtaagattcctagtgtaacacatgcatggaagacaggaaagtaaatggtgaaaggaactttatat 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1163083 tcaaaccaatgcatattagctgcttacctgcatctgtaagattcctagtgtaacacatgcatggaagacaggaaagtaaatggtgaaaggaactttatat 1163182  T
Q  206 gccgaatataatgacaggcatggtttgggaagcacgatcaacacacataacttgttctaataaacataaatatcaaacagaaattgcaaattgcaacaaa 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1163183 gccgaatataatgacaggcatggtttgggaagcacgatcaacacacataacttgttctaataaacataaatatcaaacagaaattgcaaattgcaacaaa 1163282  T
Q  306 gtaagttgttcttgttatcg 325  Q
    ||||||||||||||||||||    
T  1163283 gtaagttgttcttgttatcg 1163302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 460 - 831
Target Start/End: Complemental strand, 1850287 - 1849925
Alignment:
Q  460 atcatccatcaagcaaatcctccaatggnnnnnnnggtctataaaagggggatctgaagagtgggccagatggatggcagtaggttggatttcggtagat 559  Q
    ||||||||||||||||||||||||||||       |||||   ||| |||||||||| | ||||||||||||||||||||| ||||||||||||||        
T  1850287 atcatccatcaagcaaatcctccaatggataaaaaggtcttctaaaaggggatctgatgggtgggccagatggatggcagttggttggatttcggt---- 1850192  T
Q  560 tgctctttggtcgaagaggagtttagggtcttgttgtagatcttttaagaagagttgataaccagattcccacttatcctgaacaggaacaactctacca 659  Q
               ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  1850191 -----------cgaagaggagtttagggtcttgttgtaaatcttttaagaagagttgataatcagattcccacttatcctgaacaggaataactctacca 1850103  T
Q  660 ttctcctctttagcaaaactaatcttggtaatcaaaatgggatctccttcaagcaggtcataaccaagagcatggtcacc-gggtttaaaatacgac-ca 757  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||  |    
T  1850102 ttctcctctttagcaaaactaatcttggtaatcaaaatgggatctccttcaggcaggtcataaccaagagcatggtcaccaggttttaaaatacgactaa 1850003  T
Q  758 gatgagtcctgatttgaaaa---gtgtgattattatttccaatatctttgacacgagc-actagggcattagctaaac 831  Q
    ||||||||||||||||||||   |||||||||||||||||||||||||| |||||||| |||| ||||||||||||||    
T  1850002 gatgagtcctgatttgaaaagttgtgtgattattatttccaatatctttcacacgagcaactatggcattagctaaac 1849925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 190; E-Value: 1e-102
Query Start/End: Original strand, 383 - 699
Target Start/End: Complemental strand, 3299965 - 3299652
Alignment:
Q  383 gcatcttccttgtttttgttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtagatcatcatccatcaagcaaatcctcc 482  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||   |||||||||||||||||    
T  3299965 gcatcttccttgttttggttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtggatcatc---catcaagcaaatcctcc 3299869  T
Q  483 aatggnnnnnnnggtctataaaagggggatctgaagagtgggccagatggatggcagtaggttggatttcggtagattgctctttggtcgaagaggagtt 582  Q
    |||||       |||||   |||||||||| ||| |  || | || |||||||||||| |||| |||||||||||||||||||| |||||||||||||||    
T  3299868 aatggataaaaaggtcttctaaagggggatttgatggttgtgtcaaatggatggcagttggttcgatttcggtagattgctcttcggtcgaagaggagtt 3299769  T
Q  583 tagggtcttgttgtagatcttttaagaagagttgataaccagattcccacttatcctgaacaggaacaactctaccattctcctctttagcaaaactaat 682  Q
    ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||  ||| |||||||    
T  3299768 tagtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttcggcataactaat 3299669  T
Q  683 cttggtaatcaaaatgg 699  Q
     ||||| ||||||||||    
T  3299668 tttggtgatcaaaatgg 3299652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 190; E-Value: 1e-102
Query Start/End: Original strand, 383 - 699
Target Start/End: Complemental strand, 3392858 - 3392545
Alignment:
Q  383 gcatcttccttgtttttgttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtagatcatcatccatcaagcaaatcctcc 482  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||   |||||||||||||||||    
T  3392858 gcatcttccttgttttggttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtggatcatc---catcaagcaaatcctcc 3392762  T
Q  483 aatggnnnnnnnggtctataaaagggggatctgaagagtgggccagatggatggcagtaggttggatttcggtagattgctctttggtcgaagaggagtt 582  Q
    |||||       |||||   |||||||||| ||| |  || | || |||||||||||| |||| |||||||||||||||||||| |||||||||||||||    
T  3392761 aatggataaaaaggtcttctaaagggggatttgatggttgtgtcaaatggatggcagttggttcgatttcggtagattgctcttcggtcgaagaggagtt 3392662  T
Q  583 tagggtcttgttgtagatcttttaagaagagttgataaccagattcccacttatcctgaacaggaacaactctaccattctcctctttagcaaaactaat 682  Q
    ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||  ||| |||||||    
T  3392661 tagtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttcggcataactaat 3392562  T
Q  683 cttggtaatcaaaatgg 699  Q
     ||||| ||||||||||    
T  3392561 tttggtgatcaaaatgg 3392545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 61 - 300
Target Start/End: Complemental strand, 40419063 - 40418824
Alignment:
Q  61 aactgtttaaaatttacgaaacagatatttacatagcagagaagatcaaaccaatgcatattagctgcttacctgcatctgtaagattcctagtgtaaca 160  Q
    ||||||| || ||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||  || ||||||||| || |||||||| ||    
T  40419063 aactgttaaagatttatgaaacagatatttacgtagcagagaagatcgaaccaatgcatattagctgcttaattgtatctgtaagctttctagtgtacca 40418964  T
Q  161 catgcatggaagacaggaaagtaaatggtgaaaggaactttatatgccgaatataatgacaggcatggtttgggaagcacgatcaacacacataacttgt 260  Q
    ||||    ||||||| ||||     |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  40418963 catg----gaagacatgaaa-----tggtgaaaggaactttttatgccgaatataatgacaggcatggtttgtgaagcacgatcaacacacgtaacttgt 40418873  T
Q  261 tct---------aataaacataaatatcaaacagaaattgcaaattgca 300  Q
    |||         |||||||||||||||||||||||||||||||| ||||    
T  40418872 tcttgtaatcggaataaacataaatatcaaacagaaattgcaaactgca 40418824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 183 - 311
Target Start/End: Complemental strand, 3300147 - 3300024
Alignment:
Q  183 aaatggtgaaaggaactttatatgccgaatataat----gacaggcatggtttgggaagcacgatcaacacacataacttgttctaataaacataaatat 278  Q
    ||||||||||||| |||||||||||||||||||||    |||| ||||||||||||||||||         |||||||||||||||||||||||||||||    
T  3300147 aaatggtgaaaggtactttatatgccgaatataattaatgacatgcatggtttgggaagcac---------acataacttgttctaataaacataaatat 3300057  T
Q  279 caaacagaaattgcaaattgcaacaaagtaagt 311  Q
    ||||||||||||||||||||||||| |||||||    
T  3300056 caaacagaaattgcaaattgcaacagagtaagt 3300024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 183 - 311
Target Start/End: Complemental strand, 3393040 - 3392917
Alignment:
Q  183 aaatggtgaaaggaactttatatgccgaatataat----gacaggcatggtttgggaagcacgatcaacacacataacttgttctaataaacataaatat 278  Q
    ||||||||||||| |||||||||||||||||||||    |||| ||||||||||||||||||         |||||||||||||||||||||||||||||    
T  3393040 aaatggtgaaaggtactttatatgccgaatataattaatgacatgcatggtttgggaagcac---------acataacttgttctaataaacataaatat 3392950  T
Q  279 caaacagaaattgcaaattgcaacaaagtaagt 311  Q
    ||||||||||||||||||||||||| |||||||    
T  3392949 caaacagaaattgcaaattgcaacagagtaagt 3392917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 542 - 699
Target Start/End: Complemental strand, 40418571 - 40418417
Alignment:
Q  542 ggttggatttcggtagattgctctttggtcgaagaggagtttagggtcttgttgtagatcttttaagaagagttgataaccagattcccacttatcctga 641  Q
    |||| ||| |||||||  |||||||  || |||||||||||||| ||||||||||||||| || ||||||||||||||| |||||||||||||||| |||    
T  40418571 ggtttgatctcggtaggctgctcttacgttgaagaggagtttagtgtcttgttgtagatcattgaagaagagttgataatcagattcccacttatcatga 40418472  T
Q  642 acaggaacaactctaccattctcctctttagcaaaactaatcttggtaatcaaaatgg 699  Q
    | || |||||||||||||||   |||||  ||| ||||||||||||| ||||||||||    
T  40418471 agagcaacaactctaccatt---ctcttcggcataactaatcttggtgatcaaaatgg 40418417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 713 - 813
Target Start/End: Complemental strand, 3299617 - 3299512
Alignment:
Q  713 caggtcataaccaagagcatggtcaccggg-tttaaaatacgacc-agatgagtcctgatttgaaaa---gtgtgattattatttccaatatctttgaca 807  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||   |||||||||||||||||||||||||| |||    
T  3299617 caggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttcaca 3299518  T
Q  808 cgagca 813  Q
    ||||||    
T  3299517 cgagca 3299512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 713 - 813
Target Start/End: Complemental strand, 3392510 - 3392405
Alignment:
Q  713 caggtcataaccaagagcatggtcaccggg-tttaaaatacgacc-agatgagtcctgatttgaaaa---gtgtgattattatttccaatatctttgaca 807  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||   |||||||||||||||||||||||||| |||    
T  3392510 caggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttcaca 3392411  T
Q  808 cgagca 813  Q
    ||||||    
T  3392410 cgagca 3392405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 713 - 813
Target Start/End: Complemental strand, 40418364 - 40418262
Alignment:
Q  713 caggtcataaccaagagcatggtcaccggg-tttaaaatacgacc-agatgagtcctgatttgaaaag-tgtgattattatttccaatatctttgacacg 809  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||| | |||||||||||||||||| |||||    
T  40418364 caggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagttgtg-tcattatttccaatatctttcacacg 40418266  T
Q  810 agca 813  Q
    ||||    
T  40418265 agca 40418262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 713 - 813
Target Start/End: Complemental strand, 39879895 - 39879793
Alignment:
Q  713 caggtcataaccaagagcatggtcaccggg-tttaaaatacgacc-agatgagtcctgatttgaaaag-tgtgattattatttccaatatctttgacacg 809  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||| | |||||||||| ||||||| |||||    
T  39879895 caggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagttgtg-tcattatttccagtatctttcacacg 39879797  T
Q  810 agca 813  Q
    ||||    
T  39879796 agca 39879793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 572 - 662
Target Start/End: Complemental strand, 38987963 - 38987873
Alignment:
Q  572 gaagaggagtttagggtcttgttgtagatcttttaagaagagttgataaccagattcccacttatcctgaacaggaacaactctaccattc 662  Q
    |||||| |||| |||||||||||||||||| || ||||||||||||||| ||||||||||||||||||  |||| ||||||||||||||||    
T  38987963 gaagagtagttgagggtcttgttgtagatcattgaagaagagttgataatcagattcccacttatccttgacagcaacaactctaccattc 38987873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 572 - 662
Target Start/End: Complemental strand, 39726682 - 39726592
Alignment:
Q  572 gaagaggagtttagggtcttgttgtagatcttttaagaagagttgataaccagattcccacttatcctgaacaggaacaactctaccattc 662  Q
    |||||| |||| |||||||||||||||||| || ||||||||||||||| ||||||||||||||||||  |||| ||||||||||||||||    
T  39726682 gaagagtagttgagggtcttgttgtagatcattgaagaagagttgataatcagattcccacttatccttgacagcaacaactctaccattc 39726592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 713 - 813
Target Start/End: Complemental strand, 38987786 - 38987684
Alignment:
Q  713 caggtcataaccaagagcatggtcaccggg-tttaaaatacgacc-agatgagtcctgatttgaaaag-tgtgattattatttccaatatctttgacacg 809  Q
    |||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||| |||| | |||||||||| ||||||| |||||    
T  38987786 caggtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgagtcctgatttgaaaagttgtg-tcattatttccagtatctttcacacg 38987688  T
Q  810 agca 813  Q
    ||||    
T  38987687 agca 38987684  T

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Target: chr5; HSP #17
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 713 - 813
Target Start/End: Complemental strand, 39726499 - 39726397
Alignment:
Q  713 caggtcataaccaagagcatggtcaccggg-tttaaaatacgacc-agatgagtcctgatttgaaaag-tgtgattattatttccaatatctttgacacg 809  Q
    |||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||| |||| | |||||||||| ||||||| |||||    
T  39726499 caggtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgagtcctgatttgaaaagttgtg-tcattatttccagtatctttcacacg 39726401  T
Q  810 agca 813  Q
    ||||    
T  39726400 agca 39726397  T

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Target: chr5; HSP #18
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 572 - 662
Target Start/End: Complemental strand, 39880078 - 39879988
Alignment:
Q  572 gaagaggagtttagggtcttgttgtagatcttttaagaagagttgataaccagattcccacttatcctgaacaggaacaactctaccattc 662  Q
    ||||| |||||||| || |||||||||||| || ||||||||||||||| ||||||||||||||||||  |||| ||||||||||||||||    
T  39880078 gaagatgagtttagtgttttgttgtagatcattgaagaagagttgataatcagattcccacttatccttgacagcaacaactctaccattc 39879988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 257 - 311
Target Start/End: Complemental strand, 1850444 - 1850390
Alignment:
Q  257 ttgttctaataaacataaatatcaaacagaaattgcaaattgcaacaaagtaagt 311  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  1850444 ttgttctaataaacataaatatcaaacagaaattgtaaattgcaacaaagtaagt 1850390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 219 - 300
Target Start/End: Complemental strand, 38988336 - 38988246
Alignment:
Q  219 acaggcatggtttgggaagcacgatcaacacacataacttgttct---------aataaacataaatatcaaacagaaattgcaaattgca 300  Q
    ||||||||||||||||||||| |||||||||||||||||||||||         |||||||||||||||||||||||||||||||| ||||    
T  38988336 acaggcatggtttgggaagcaagatcaacacacataacttgttcttgtaatcggaataaacataaatatcaaacagaaattgcaaactgca 38988246  T

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Target: chr5; HSP #21
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 183 - 300
Target Start/End: Complemental strand, 39880495 - 39880369
Alignment:
Q  183 aaatggtgaaaggaactttatatgccgaatataatgacaggcatggtttgggaagcacgatcaacacacataacttgttct---------aataaacata 273  Q
    |||||||||||| |||||| ||||||||||||| |||||| |||| ||||||||||| |||||||||||  ||| | ||||         ||||||||||    
T  39880495 aaatggtgaaagtaactttttatgccgaatatattgacagacatgttttgggaagcaagatcaacacacggaacatattcttgtgatcggaataaacata 39880396  T
Q  274 aatatcaaacagaaattgcaaattgca 300  Q
    |||||||||||||||||||||| ||||    
T  39880395 aatatcaaacagaaattgcaaactgca 39880369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 587 - 644
Target Start/End: Complemental strand, 39169098 - 39169041
Alignment:
Q  587 gtcttgttgtagatcttttaagaagagttgataaccagattcccacttatcctgaaca 644  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||| ||| ||||    
T  39169098 gtcttgttgtagatcttttaaaaagagttgataatcagattcccacttaccctcaaca 39169041  T

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Target: chr5; HSP #23
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 392 - 487
Target Start/End: Complemental strand, 38988140 - 38988048
Alignment:
Q  392 ttgtttttgttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtagatcatcatccatcaagcaaatcctccaatgg 487  Q
    ||||| ||||||||||||  ||||||||||||| | ||||||| |||||||||||| || | |||   ||||||| |||||||| |||||||||||    
T  38988140 ttgttgttgttattggaacaaacaaaacatcaacaaaagtgatttttgtttaagctagtgactag---atcatccgtcaagcaagtcctccaatgg 38988048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 716 - 779
Target Start/End: Complemental strand, 39399937 - 39399872
Alignment:
Q  716 gtcataaccaagagcatggtcaccgggttt-aaaatacgacca-gatgagtcctgatttgaaaagt 779  Q
    ||||||||||||||||| |||||||| ||| |||||| ||||| ||||||||||||||||||||||    
T  39399937 gtcataaccaagagcatagtcaccggattttaaaatatgaccaagatgagtcctgatttgaaaagt 39399872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 398 - 487
Target Start/End: Complemental strand, 40418712 - 40418626
Alignment:
Q  398 ttgttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtagatcatcatccatcaagcaaatcctccaatgg 487  Q
    ||||||||||||  |||||||||| || | ||||||| |||||||||||| |||| |||   ||||||| |||||||| |||||||||||    
T  40418712 ttgttattggaacaaacaaaacattaacaaaagtgatttttgtttaagctagtaactag---atcatccgtcaagcaagtcctccaatgg 40418626  T

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Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 716 - 813
Target Start/End: Complemental strand, 39168924 - 39168825
Alignment:
Q  716 gtcataaccaagagcatggtcaccgg-gtttaaaatacgacc-agatgagtcctgatttgaaaag-tgtgattattatttccaatatctttgacacgagc 812  Q
    ||||||||||||||||| ||||||||  ||||||||| |||| ||||||||  |||||||||||| |||| | ||||||||||| |||||  ||||||||    
T  39168924 gtcataaccaagagcatagtcaccggattttaaaatatgacctagatgagttttgatttgaaaagttgtg-tcattatttccaaaatcttccacacgagc 39168826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 392 - 487
Target Start/End: Complemental strand, 39726863 - 39726767
Alignment:
Q  392 ttgtttttgttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtagat-catcatccatcaagcaaatcctccaatgg 487  Q
    ||||| || |||||||||  ||||||||||||| | | ||||| |||||||||||| |||| ||| |  ||||||| |||||||| |||||||||||    
T  39726863 ttgttgttattattggaacaaacaaaacatcaacaaaggtgatttttgtttaagctagtaactagctagatcatccgtcaagcaagtcctccaatgg 39726767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 596 - 638
Target Start/End: Complemental strand, 39400084 - 39400042
Alignment:
Q  596 tagatcttttaagaagagttgataaccagattcccacttatcc 638  Q
    |||||||| |||||||||||||||| |||||| ||||||||||    
T  39400084 tagatcttctaagaagagttgataatcagattgccacttatcc 39400042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 415 - 487
Target Start/End: Complemental strand, 39880232 - 39880163
Alignment:
Q  415 aaaacatcaatagaagtgatgtttgtttaagcttgtaagtagatcatcatccatcaagcaaatcctccaatgg 487  Q
    |||||||||| | ||||||| |||||||||||| |||| |||   ||||||| |||||||| |||||||||||    
T  39880232 aaaacatcaacaaaagtgatttttgtttaagctagtaactag---atcatccgtcaagcaagtcctccaatgg 39880163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 124
Target Start/End: Complemental strand, 39400549 - 39400512
Alignment:
Q  87 atttacatagcagagaagatcaaaccaatgcatattag 124  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  39400549 atttacatagcatagaaaatcaaaccaatgcatattag 39400512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 104; Significance: 2e-51; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 7 - 300
Target Start/End: Original strand, 25911510 - 25911821
Alignment:
Q  7 atccagcacatgaatgaatcccatgtaaaaggtagtactataccacaaacaagcaactgtttaaaatttacgaaacagatatttacatagcagagaagat 106  Q
    |||||||||| |||||||||| || ||||||||| ||| |||| ||||||||    ||||| || ||||| |||||||||||||||||||||||||||||    
T  25911510 atccagcacaggaatgaatcc-atataaaaggtaatacgatactacaaacaa----ctgttaaagatttatgaaacagatatttacatagcagagaagat 25911604  T
Q  107 caaaccaatgcatattagctgcttacctgcatctgtaagattcctagtgtaacacatgcatggaagacaggaaagtaaatg------------------g 188  Q
    |||||||||| |||||||||||||| |||  ||||||||||| |||||||| ||    |||||||||||||||||||||||                  |    
T  25911605 caaaccaatgtatattagctgcttaactgtgtctgtaagatttctagtgtacca----catggaagacaggaaagtaaatggtagggtgaggtgaaatag 25911700  T
Q  189 tgaaaggaactttatatgccgaatataatgacaggcatggtttgggaagcacgatcaacacacataacttgttct---------aataaacataaatatc 279  Q
    ||||||||| ||| |||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||         ||||||||||| ||||    
T  25911701 tgaaaggaattttttatgccgaatataatgacagacatggtttgggaagcatgatcaacacacgtaacttgttcttgtaatcggaataaacataagtatc 25911800  T
Q  280 aaacagaaattgcaaattgca 300  Q
    |||||||||||||||| ||||    
T  25911801 aaacagaaattgcaaactgca 25911821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 579 - 699
Target Start/End: Original strand, 25912122 - 25912239
Alignment:
Q  579 agtttagggtcttgttgtagatcttttaagaagagttgataaccagattcccacttatcctgaacaggaacaactctaccattctcctctttagcaaaac 678  Q
    |||||||||||||| |||||||  |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||   |||||  ||| |||    
T  25912122 agtttagggtcttgctgtagataatttaagaagagttgataatcagattcccacttatcctgaacagcaacaactctaccatt---ctcttcggcataac 25912218  T
Q  679 taatcttggtaatcaaaatgg 699  Q
    |||||||||| ||||||||||    
T  25912219 taatcttggtgatcaaaatgg 25912239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 713 - 813
Target Start/End: Original strand, 25912295 - 25912397
Alignment:
Q  713 caggtcataaccaagagcatggtcaccggg-tttaaaatacgacc-agatgagtcctgatttgaaaag-tgtgattattatttccaatatctttgacacg 809  Q
    ||||||||||||||||||||||||| |||| |||| ||||||||| |||||||||||||||||||||| |||| | |||||||||||||||||| |||||    
T  25912295 caggtcataaccaagagcatggtcatcgggttttagaatacgaccaagatgagtcctgatttgaaaagttgtg-tcattatttccaatatctttcacacg 25912393  T
Q  810 agca 813  Q
    ||||    
T  25912394 agca 25912397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 392 - 462
Target Start/End: Original strand, 44444435 - 44444505
Alignment:
Q  392 ttgtttttgttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtagatcatc 462  Q
    ||||||| |||||||||   ||||||||||||| | ||||||| ||||||||||||||||| |||||||||    
T  44444435 ttgttttcgttattggagtaaacaaaacatcaacaaaagtgatttttgtttaagcttgtaactagatcatc 44444505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 392 - 487
Target Start/End: Original strand, 25911942 - 25912034
Alignment:
Q  392 ttgtttttgttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtagatcatcatccatcaagcaaatcctccaatgg 487  Q
    ||||| || |||||||||  ||||||||||||| | ||||||| |||||||||||| |||| |||   ||||||| |||||||| |||||||||||    
T  25911942 ttgttgttattattggaacaaacaaaacatcaacaaaagtgatttttgtttaagctagtaactag---atcatccgtcaagcaagtcctccaatgg 25912034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 716 - 779
Target Start/End: Original strand, 44444772 - 44444837
Alignment:
Q  716 gtcataaccaagagcatggtcacc-gggtttaaaatacgacc-agatgagtcctgatttgaaaagt 779  Q
    ||||||||||||||||| |||||| || |||||||||||||| ||||||||| |||||||||||||    
T  44444772 gtcataaccaagagcatagtcaccaggttttaaaatacgaccaagatgagtcttgatttgaaaagt 44444837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 263
Target Start/End: Original strand, 44444207 - 44444272
Alignment:
Q  198 ctttatatgccgaatataatgacaggcatggtttgggaagcacgatcaacacacataacttgttct 263  Q
    ||||||||  ||||||| |||||  ||||||||||||||||||||  ||||||| |||||||||||    
T  44444207 ctttatatttcgaatattatgactcgcatggtttgggaagcacgagtaacacacgtaacttgttct 44444272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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