View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3141A-Insertion-14 (Length: 389)
Name: NF3141A-Insertion-14
Description: NF3141A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3141A-Insertion-14 |
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Alignment Details
Target: chr3 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 8 - 379
Target Start/End: Original strand, 1516809 - 1517180
Alignment:
| Q |
8 |
ggtctagtatctggtcgactaagtgccttgaaagaaggttttccttagagtattggaaggagcgatcagattccaggttggaaggcaccatggcttcgaa |
107 |
Q |
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| T |
1516809 |
ggtctagtatctggtcgactaagtgccttgaaagaaggttttccttagagtattggaaggagcgatcagattccaggttggaaggcaccatggcttcgaa |
1516908 |
T |
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| Q |
108 |
aaggttctcttcttaagtgctcggctcatctttctccatcatggtcagatctgtgtcgaagacttgctacatcaccattccaagtcttggcatgttgaag |
207 |
Q |
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| T |
1516909 |
aaggttctcttcttaagtgctcggctcatctttctccatcatggtcagatctgtgtcgaagacttgctacatcaccattccaagtcttggcatgttgaag |
1517008 |
T |
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| Q |
208 |
tgatttgaggtatgttccataccactatggcttataatattaatgatattttgctatattcccagttnnnnnnnntaggattacttggtatcctgagatt |
307 |
Q |
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| T |
1517009 |
tgatttgaggtatgttccataccactatggcttataatattaatgatattttgctatattcccagttaaaaaaaataggattacttggtatcctgagatt |
1517108 |
T |
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| Q |
308 |
gtcgcctcttatttgatgaagtcggcatataggctagctacggctcatcttgtggacacaagtgaacttcat |
379 |
Q |
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| T |
1517109 |
gtcgcctcttatttgatgaagtcggcatataggctagctacggctcatcttgtggacacaagtgaacttcat |
1517180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 11 - 379
Target Start/End: Original strand, 2908151 - 2908515
Alignment:
| Q |
11 |
ctagtatctggtcgactaagtgccttg--aaagaaggttttccttagagtattggaaggagcgatcagattccaggttggaaggcaccatggcttcgaaa |
108 |
Q |
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||||||||||||| |||||||||||| |||||||||||||| |||||| |||||||||| | ||| |||||||||||||||| || |||| | |||| |
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| T |
2908151 |
ctagtatctggtcagctaagtgccttgtgaaagaaggttttccgtagagttttggaaggagtggtcatattccaggttggaaggtacattggcattgaaa |
2908250 |
T |
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| Q |
109 |
aggttctcttcttaagtgctcggctcatctttctccatcatggtcagatct--gtgtcgaagacttgctacatcaccattccaagtcttggcatgttgaa |
206 |
Q |
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||||| ||||| || ||||||| |||||| | |||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
2908251 |
aggtt--------aagtgttcagctcatccttctccgttatggtcagatctttgtgtcgaagacttgctgcatcaccattccaaggcttggcatgttgaa |
2908342 |
T |
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| Q |
207 |
gtgatttgaggtatgttccataccactatggcttataatattaatgatattttgctatattcccagttnnnnnnnntaggattacttggtatcctgagat |
306 |
Q |
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||||||||||||||| | | ||||||||||| ||||||||||| || |||| ||||||||||||||| |||||||||||||||||||||||| |
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| T |
2908343 |
gtgatttgaggtatgcttcctaccactatggtttataatattattggcatttcgctatattcccagttaaagcaaataggattacttggtatcctgagat |
2908442 |
T |
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| Q |
307 |
tgtcgcctcttatttgatgaagtcggcatataggctagctacggctcatcttgtggacacaagtgaacttcat |
379 |
Q |
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||| ||||||||| ||||||||||||||||||||||| || |||||| ||||||||||||||||||||||| |
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| T |
2908443 |
tgtgacctcttattcgatgaagtcggcatataggctagttatcgctcattttgtggacacaagtgaacttcat |
2908515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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