View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3141A-Insertion-15 (Length: 396)

Name: NF3141A-Insertion-15
Description: NF3141A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3141A-Insertion-15
NF3141A-Insertion-15
[»] chr7 (6 HSPs)
chr7 (53-396)||(26177430-26177775)
chr7 (53-189)||(19160098-19160235)
chr7 (53-189)||(20759497-20759634)
chr7 (55-113)||(6670736-6670794)
chr7 (3-42)||(26177376-26177415)
chr7 (196-252)||(12686549-12686605)
[»] scaffold0065 (1 HSPs)
scaffold0065 (55-396)||(42226-42568)
[»] chr3 (7 HSPs)
chr3 (3-257)||(2289501-2289757)
chr3 (245-393)||(20303935-20304084)
chr3 (53-125)||(20304077-20304149)
chr3 (3-128)||(15409007-15409134)
chr3 (73-153)||(3570223-3570304)
chr3 (55-126)||(41760648-41760719)
chr3 (55-113)||(51464881-51464939)
[»] chr1 (6 HSPs)
chr1 (65-171)||(46137106-46137213)
chr1 (67-126)||(15199597-15199656)
chr1 (78-153)||(36776872-36776948)
chr1 (55-151)||(9133247-9133345)
chr1 (55-114)||(159161-159220)
chr1 (72-127)||(15218684-15218739)
[»] scaffold0741 (3 HSPs)
scaffold0741 (53-125)||(6311-6383)
scaffold0741 (328-396)||(6401-6470)
scaffold0741 (8-42)||(6262-6296)
[»] chr2 (4 HSPs)
chr2 (58-189)||(21862217-21862349)
chr2 (65-126)||(22834162-22834223)
chr2 (55-125)||(18857023-18857093)
chr2 (87-165)||(29807433-29807512)
[»] chr5 (3 HSPs)
chr5 (8-125)||(37634812-37634931)
chr5 (328-396)||(37634725-37634794)
chr5 (55-113)||(25802765-25802823)
[»] chr6 (3 HSPs)
chr6 (3-128)||(25823175-25823302)
chr6 (53-128)||(16170922-16170996)
chr6 (55-153)||(21273124-21273225)
[»] chr8 (2 HSPs)
chr8 (53-129)||(25820405-25820481)
chr8 (55-126)||(33858666-33858737)
[»] chr4 (3 HSPs)
chr4 (65-153)||(1656499-1656588)
chr4 (55-126)||(31924333-31924404)
chr4 (273-355)||(1656718-1656800)
[»] scaffold0073 (1 HSPs)
scaffold0073 (55-153)||(40606-40706)


Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 53 - 396
Target Start/End: Original strand, 26177430 - 26177775
Alignment:
Q  53 tatgcaaaaagtttcatataaaacccgctctcagggtcctcttccacggtttatatgaatatcattttttggaacattggagaattggtaataatgattc 152  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||| |||||||    
T  26177430 tatgcaaaaagtttcgtataaaacccgctctcagggtcctcttccaccgtttaaatgaatatcattttttggaacatcggagaattggtaatcatgattc 26177529  T
Q  153 ctgacttgctttctctgattggtgtcggctacataatccg-cattggtatttattgcggaacctatggtttattatgattctactccgagttggttttgg 251  Q
    |||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||| || || ||||||||||||||||    
T  26177530 ctgacttgctttctctgattggtgtcggctacataatccgtcatggttatttattgcggaacctatggtttattatgcttttattccgagttggttttgg 26177629  T
Q  252 ataaatgtatgtgttactaagaataatagggagcctctgattcctgaaatgtgggcggtgtgaggttctgactttgtatatacagtaatttttgtctctt 351  Q
       ||||||||||||||||||||||| ||||||||||| ||| || | |||||| |||||||||||||||||| | ||||||||||||||||||||||||    
T  26177630 gggaatgtatgtgttactaagaataacagggagcctctcatttcttacatgtggtcggtgtgaggttctgactctatatatacagtaatttttgtctctt 26177729  T
Q  352 ctca-tttgcagaggaacaaaattatagattgcaggtatttatgga 396  Q
    || | | |||||||||||||||||||| ||||||||||||||||||    
T  26177730 cttagtctgcagaggaacaaaattatatattgcaggtatttatgga 26177775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 53 - 189
Target Start/End: Original strand, 19160098 - 19160235
Alignment:
Q  53 tatgcaaaaagtttcatataaaacccgctctcagggtcctcttccacggtttatatgaatatcattttttggaaca-ttggagaattggtaataatgatt 151  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||| ||||| || ||||| || |||||||| | | ||  ||||||||||| |||||    
T  19160098 tatggaaaaagttccatataaaacccgctctcagggtcctcttccaccgtttaaataaatattatcttttggaaaactcgggaaattggtaatattgatt 19160197  T
Q  152 cctgacttgctttctctgattggtgtcggctacataat 189  Q
     | |||||||||||||||||  ||||||||||||||||    
T  19160198 accgacttgctttctctgatatgtgtcggctacataat 19160235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 53 - 189
Target Start/End: Original strand, 20759497 - 20759634
Alignment:
Q  53 tatgcaaaaagtttcatataaaacccgctctcagggtcctcttccacggtttatatgaatatcattttttggaaca-ttggagaattggtaataatgatt 151  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||| ||||| || ||||| || |||||||| | | ||  ||||||||||| |||||    
T  20759497 tatggaaaaagttccatataaaacccgctctcagggtcctcttccaccgtttaaataaatattatcttttggaaaactcgggaaattggtaatattgatt 20759596  T
Q  152 cctgacttgctttctctgattggtgtcggctacataat 189  Q
     | |||||||||||||||||  ||||||||||||||||    
T  20759597 accgacttgctttctctgatatgtgtcggctacataat 20759634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 113
Target Start/End: Complemental strand, 6670794 - 6670736
Alignment:
Q  55 tgcaaaaagtttcatataaaacccgctctcagggtcctcttccacggtttatatgaata 113  Q
    ||||||| | |||||| |||||||||||||||||||||||||| | ||||| |||||||    
T  6670794 tgcaaaaggcttcatacaaaacccgctctcagggtcctcttcctccgtttaaatgaata 6670736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 26177376 - 26177415
Alignment:
Q  3 caacagaggtaccatttacagaggttgtttccaagtctca 42  Q
    |||| ||||||||||||||| |||||||||||||||||||    
T  26177376 caaccgaggtaccatttacacaggttgtttccaagtctca 26177415  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 12686605 - 12686549
Alignment:
Q  196 tggtatttattgcggaacctatggtttattatgattctactccgagttggttttgga 252  Q
    |||| |||||||| |||||||||||  | |||||||||| ||||| |||||||||||    
T  12686605 tggtttttattgcagaacctatggtggagtatgattctattccgaattggttttgga 12686549  T

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Target: scaffold0065 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 55 - 396
Target Start/End: Original strand, 42226 - 42568
Alignment:
Q  55 tgcaaaaagtttcatataaaacccgctctcagggtcctcttccacggtttatatgaatatcatttttt--ggaacattggagaattggtaataatgattc 152  Q
    |||||||||||| ||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||  ||||||| |||||||||||||||||||  |    
T  42226 tgcaaaaagttttatataaaacccactctcagggtcctcttccaccgtttaaatgaatatcattttttttggaacatcggagaattggtaataatga--c 42323  T
Q  153 ctgacttgctttctctgattggtgtcggctacataatccg-cattggtatttattgcggaacctatggtttattatgattctactccgagttggttttgg 251  Q
    |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| || || ||||||||||||||||    
T  42324 ctgacttgctttctctgattggtgtcggctacataatccgtcatgggtatttattgcggaacctatggtttattatgcttttattccgagttggttttgg 42423  T
Q  252 ataaatgtatgtgttactaagaataatagggagcctctgattcctgaaatgtgggcggtgtgaggttctgactttgtatatacagtaatttttgtctctt 351  Q
    | ||||||||||||||||||||||||| ||||||||||  ||||| | ||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  42424 agaaatgtatgtgttactaagaataatggggagcctctcgttcctaacatgtgggcggtgtgaggttctgactctgtatataaagtaatttttgtctctt 42523  T
Q  352 ctca-tttgcagaggaacaaaattatagattgcaggtatttatgga 396  Q
    |||| | |||||||||||||||||||| |||||| |||||||||||    
T  42524 ctcagtctgcagaggaacaaaattatatattgca-gtatttatgga 42568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 114; Significance: 1e-57; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 3 - 257
Target Start/End: Complemental strand, 2289757 - 2289501
Alignment:
Q  3 caacagaggtaccatttacagaggttgtttccaagtctcatnnnnnnnnntatgcaaaaagtttcatataaaacccgctctcagggtcctcttccacggt 102  Q
    |||| ||||||||||||||||||||||||||||||||| |          ||||||||||||||||||||||||  ||||||||||||||||||||| ||    
T  2289757 caaccgaggtaccatttacagaggttgtttccaagtctaaaaataaagaatatgcaaaaagtttcatataaaacatgctctcagggtcctcttccaccgt 2289658  T
Q  103 ttatatgaatatcattttttggaacatt-ggagaattggtaataatgattcctgacttgctttctctgattggtgtcggctacataatccg-cattggta 200  Q
    ||| ||||||||| |||| ||||||||| || |||||||||||||||||||  | || ||||||||| ||  | |||||||| |||||| | ||||||||    
T  2289657 ttaaatgaatatctttttatggaacattcggggaattggtaataatgattctcggctcgctttctctaatatgggtcggctagataatctgtcattggta 2289558  T
Q  201 tttattgcggaacctatggtttattatgattctactccgagttggttttggataaat 257  Q
    |||||||  ||||||||||||||||||| ||||| ||||||||||||||||| ||||    
T  2289557 tttattgaagaacctatggtttattatgcttctattccgagttggttttggagaaat 2289501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 245 - 393
Target Start/End: Complemental strand, 20304084 - 20303935
Alignment:
Q  245 gttttggataaatgtatgtgttactaagaataatagggagcctctgattcctgaaatgtgggcggtgtgaggttctgactttgtatatacagtaattttt 344  Q
    ||||||||  ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||| |||||||||||||||||    
T  20304084 gttttggaggaatgtatgtgttactaagaataatagggagcctctcattcctgacatgtgggcggtgtgaggttctaactttatatatacagtaattttt 20303985  T
Q  345 gtctcttctca-tttgcagaggaacaaaattatagattgcaggtatttat 393  Q
    ||||||||||| | |||||||||||||||||||| |||||||||||||||    
T  20303984 gtctcttctcagtctgcagaggaacaaaattatatattgcaggtatttat 20303935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 53 - 125
Target Start/End: Complemental strand, 20304149 - 20304077
Alignment:
Q  53 tatgcaaaaagtttcatataaaacccgctctcagggtcctcttccacggtttatatgaatatcattttttgga 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||    
T  20304149 tatgcaaaaagtttcatataaaacccgctctcagggtcctcttccaccgtttaaatgaatatcatgttttgga 20304077  T

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Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 3 - 128
Target Start/End: Original strand, 15409007 - 15409134
Alignment:
Q  3 caacagaggtaccatttacagaggttgtttccaagtctcatnnnnnnnnn--tatgcaaaaagtttcatataaaacccgctctcagggtcctcttccacg 100  Q
    |||| ||||||||||||| |||||||||||||||||||||            |||||||||| || ||||||||||||||||||| |||||||||||||     
T  15409007 caaccgaggtaccatttatagaggttgtttccaagtctcagaagaagaaaaatatgcaaaaaattccatataaaacccgctctcaaggtcctcttccacc 15409106  T
Q  101 gtttatatgaatatcattttttggaaca 128  Q
    || || ||||||||||| ||||||||||    
T  15409107 gtctaaatgaatatcatcttttggaaca 15409134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 73 - 153
Target Start/End: Complemental strand, 3570304 - 3570223
Alignment:
Q  73 aaacccgctctcagggtcctcttccacggtttatatgaatatcattttttggaacatt-ggagaattggtaataatgattcc 153  Q
    ||||||||||||| || |||||||| | ||||| |||||||| |||||||||||  || || | ||||||||||||||||||    
T  3570304 aaacccgctctcaaggacctcttcctccgtttaaatgaatattattttttggaaagttcgggggattggtaataatgattcc 3570223  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 55 - 126
Target Start/End: Complemental strand, 41760719 - 41760648
Alignment:
Q  55 tgcaaaaagtttcatataaaacccgctctcagggtcctcttccacggtttatatgaatatcattttttggaa 126  Q
    ||||||| ||| |||| |||||||||||||||||||| |  |||| ||||| |||||||| |||| ||||||    
T  41760719 tgcaaaaggttgcatacaaaacccgctctcagggtccccgcccaccgtttaaatgaatattatttattggaa 41760648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 113
Target Start/End: Complemental strand, 51464939 - 51464881
Alignment:
Q  55 tgcaaaaagtttcatataaaacccgctctcagggtcctcttccacggtttatatgaata 113  Q
    ||||||| | |||||| |||||| ||||||||||||||||||| | ||||| |||||||    
T  51464939 tgcaaaaggcttcatacaaaaccagctctcagggtcctcttcctccgtttaaatgaata 51464881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 65 - 171
Target Start/End: Original strand, 46137106 - 46137213
Alignment:
Q  65 ttcatataaaacccgctctcagggtcctcttccacggtttatatgaatatcattttttggaacat-tggagaattggtaataatgattcctgacttgctt 163  Q
    ||||||||||||||||||||| ||||||||||||| ||||| |||||||| ||||||||||||||  || |||||||||||| ||||||| |||||||||    
T  46137106 ttcatataaaacccgctctcaaggtcctcttccaccgtttaaatgaatattattttttggaacatccggggaattggtaatattgattcccgacttgctt 46137205  T
Q  164 tctctgat 171  Q
    ||||||||    
T  46137206 tctctgat 46137213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 126
Target Start/End: Complemental strand, 15199656 - 15199597
Alignment:
Q  67 catataaaacccgctctcagggtcctcttccacggtttatatgaatatcattttttggaa 126  Q
    |||| |||||||||||||||||||||||||||| ||||| ||| |||| |||||||||||    
T  15199656 catacaaaacccgctctcagggtcctcttccaccgtttaaatgtatattattttttggaa 15199597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 78 - 153
Target Start/End: Complemental strand, 36776948 - 36776872
Alignment:
Q  78 cgctctcagggtcctcttccacggtttatatgaatatcattttttggaacatt-ggagaattggtaataatgattcc 153  Q
    |||||||||||||||||||| | ||||| || ||||| ||||||||||||||| || | ||||||||||||| ||||    
T  36776948 cgctctcagggtcctcttcctctgtttaaataaatattattttttggaacattcgggggattggtaataatggttcc 36776872  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 151
Target Start/End: Complemental strand, 9133345 - 9133247
Alignment:
Q  55 tgcaaaaagtttcatataaaacccgctctcagggtcctcttccacggtttatatgaatat-cattttttggaacat-tggagaattggtaataatgatt 151  Q
    ||||||| | |||||| |||||||||||||| ||||||||||| | ||||| ||||||||   |||||||||||||  || | ||||||||||||||||    
T  9133345 tgcaaaaggcttcatacaaaacccgctctcaaggtcctcttcctccgtttaaatgaatatattttttttggaacatccgggggattggtaataatgatt 9133247  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 55 - 114
Target Start/End: Complemental strand, 159220 - 159161
Alignment:
Q  55 tgcaaaaagtttcatataaaacccgctctcagggtcctcttccacggtttatatgaatat 114  Q
    ||||||| | ||| || |||||||||||||||||||||||||| | ||||| ||||||||    
T  159220 tgcaaaagggttcttacaaaacccgctctcagggtcctcttcctccgtttaaatgaatat 159161  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 127
Target Start/End: Complemental strand, 15218739 - 15218684
Alignment:
Q  72 aaaacccgctctcagggtcctcttccacggtttatatgaatatcattttttggaac 127  Q
    |||||||  ||||||||||||||||||| ||||| |||||||| ||||||| ||||    
T  15218739 aaaacccattctcagggtcctcttccaccgtttaaatgaatattattttttagaac 15218684  T

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Target: scaffold0741 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: scaffold0741
Description:

Target: scaffold0741; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 53 - 125
Target Start/End: Original strand, 6311 - 6383
Alignment:
Q  53 tatgcaaaaagtttcatataaaacccgctctcagggtcctcttccacggtttatatgaatatcattttttgga 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||    
T  6311 tatgcaaaaagtttcatataaaacccgctctcagggtcctcttccaccgtttaaatgaatatcatgttttgga 6383  T

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Target: scaffold0741; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 328 - 396
Target Start/End: Original strand, 6401 - 6470
Alignment:
Q  328 tatatacagtaatttttgtctcttctcatt-tgcagaggaacaaaattatagattgcaggtatttatgga 396  Q
    |||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||    
T  6401 tatatacagtaatttttgtctcttctcagtctgcagaggaacaaaattatatattgcaggtatttatgga 6470  T

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Target: scaffold0741; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 6262 - 6296
Alignment:
Q  8 gaggtaccatttacagaggttgtttccaagtctca 42  Q
    ||||||||||||||| |||||||||||||||||||    
T  6262 gaggtaccatttacacaggttgtttccaagtctca 6296  T

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Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 58 - 189
Target Start/End: Original strand, 21862217 - 21862349
Alignment:
Q  58 aaaaagtttcatataaaacccgctctcagggtcctcttccacggtttatatgaatatcattttttggaacattggaga-attggtaataatgattcctga 156  Q
    |||| ||| |||||||||||||||||||||||||||||||||  |||| ||||||||||| ||||||||||   | || |||||||||| ||||| | ||    
T  21862217 aaaatgttccatataaaacccgctctcagggtcctcttccaccatttaaatgaatatcatcttttggaacacccgggacattggtaatattgattaccga 21862316  T
Q  157 cttgctttctctgattggtgtcggctacataat 189  Q
    |||||||||||||||  ||||||||||| ||||    
T  21862317 cttgctttctctgatatgtgtcggctacgtaat 21862349  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 65 - 126
Target Start/End: Complemental strand, 22834223 - 22834162
Alignment:
Q  65 ttcatataaaacccgctctcagggtcctcttccacggtttatatgaatatcattttttggaa 126  Q
    |||||| |||||||||||||||||||||||||||| ||||| |||||||| |||||||||||    
T  22834223 ttcataaaaaacccgctctcagggtcctcttccactgtttaaatgaatattattttttggaa 22834162  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 125
Target Start/End: Original strand, 18857023 - 18857093
Alignment:
Q  55 tgcaaaaagtttcatataaaacccgctctcagggtcctcttccacggtttatatgaatatcattttttgga 125  Q
    ||||||| | |||||| |||||||||||||| ||||||||||| | ||||| |||||||| | ||||||||    
T  18857023 tgcaaaaggcttcatacaaaacccgctctcaaggtcctcttcctccgtttaaatgaatattagtttttgga 18857093  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 87 - 165
Target Start/End: Original strand, 29807433 - 29807512
Alignment:
Q  87 ggtcctcttccacggtttatatgaatatcattttttggaacatt-ggagaattggtaataatgattcctgacttgctttc 165  Q
    ||||||||||||| | ||| || ||||| |||| |||||||||  |||| |||||||||||||||||| | |||||||||    
T  29807433 ggtcctcttccaccgcttaaataaatattatttattggaacatccggaggattggtaataatgattcccgtcttgctttc 29807512  T

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Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 37634931 - 37634812
Alignment:
Q  8 gaggtaccatttacagaggttgtttccaagtctcatnnnnnnnnn--tatgcaaaaagtttcatataaaacccgctctcagggtcctcttccacggttta 105  Q
    ||||||||||||||| |||||||||||||||||||            ||||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  37634931 gaggtaccatttacacaggttgtttccaagtctcagaaaaaaaagaatatgcaaaaagtttcatataaaacccgctctcatggtcctcttccaccgttta 37634832  T
Q  106 tatgaatatcattttttgga 125  Q
     ||||||||||| |||||||    
T  37634831 aatgaatatcatgttttgga 37634812  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 328 - 396
Target Start/End: Complemental strand, 37634794 - 37634725
Alignment:
Q  328 tatatacagtaatttttgtctcttctcatt-tgcagaggaacaaaattatagattgcaggtatttatgga 396  Q
    ||||||| |||||||||||||||||||| | |||||||||||||||||||| ||||||||||||| ||||    
T  37634794 tatatacggtaatttttgtctcttctcagtatgcagaggaacaaaattatatattgcaggtatttctgga 37634725  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 113
Target Start/End: Original strand, 25802765 - 25802823
Alignment:
Q  55 tgcaaaaagtttcatataaaacccgctctcagggtcctcttccacggtttatatgaata 113  Q
    ||||||| | |||||| |||||||||||||||||||||||||| | ||||| |||||||    
T  25802765 tgcaaaaggcttcatacaaaacccgctctcagggtcctcttcctccgtttaaatgaata 25802823  T

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Target: chr6 (Bit Score: 54; Significance: 7e-22; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 3 - 128
Target Start/End: Original strand, 25823175 - 25823302
Alignment:
Q  3 caacagaggtaccatttacagaggttgtttccaagtctcatnnnnnnnnn--tatgcaaaaagtttcatataaaacccgctctcagggtcctcttccacg 100  Q
    |||| ||||||||||||| |||||||||||||||||||||            |||||||||| || |||||||||||||||||||||||||||||||||     
T  25823175 caaccgaggtaccatttatagaggttgtttccaagtctcagaagaagaaaaatatgcaaaaaattccatataaaacccgctctcagggtcctcttccacc 25823274  T
Q  101 gtttatatgaatatcattttttggaaca 128  Q
    || || ||||||||||| ||||||||||    
T  25823275 gtctaaatgaatatcatcttttggaaca 25823302  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 53 - 128
Target Start/End: Original strand, 16170922 - 16170996
Alignment:
Q  53 tatgcaaaaagtttcatataaaacccgctctcagggtcctcttccacggtttatatgaatatcattttttggaaca 128  Q
    |||||||||| || ||||||||||||||||||| ||||||||||||| || || ||||||||||| ||||||||||    
T  16170922 tatgcaaaaaattccatataaaacccgctctca-ggtcctcttccaccgtctaaatgaatatcatcttttggaaca 16170996  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 55 - 153
Target Start/End: Original strand, 21273124 - 21273225
Alignment:
Q  55 tgcaaaaagtttcatataaaacccgctctcagggtcctcttccacggtttatatgaata--tcattttttggaacat-tggagaattggtaataatgatt 151  Q
    ||||||| | |||||| |||||||||||||||||||||||||| | ||||| |||||||  |  |||||||||||||  || | ||||||||||||||||    
T  21273124 tgcaaaaggcttcatacaaaacccgctctcagggtcctcttcctccgtttaaatgaatatttttttttttggaacatccgggggattggtaataatgatt 21273223  T
Q  152 cc 153  Q
    ||    
T  21273224 cc 21273225  T

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Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 53 - 129
Target Start/End: Original strand, 25820405 - 25820481
Alignment:
Q  53 tatgcaaaaagtttcatataaaacccgctctcagggtcctcttccacggtttatatgaatatcattttttggaacat 129  Q
    ||||||||||||| |||| ||||| |||||||||||||||||||||| ||||| |||||||| ||||||||||||||    
T  25820405 tatgcaaaaagttccatacaaaactcgctctcagggtcctcttccaccgtttaaatgaatataattttttggaacat 25820481  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 55 - 126
Target Start/End: Complemental strand, 33858737 - 33858666
Alignment:
Q  55 tgcaaaaagtttcatataaaacccgctctcagggtcctcttccacggtttatatgaatatcattttttggaa 126  Q
    ||||||| ||| |||| |||||||||||||||||||| |  |||| ||||| |||||||| |||| ||||||    
T  33858737 tgcaaaaggttgcatacaaaacccgctctcagggtccccgcccaccgtttaaatgaatattatttattggaa 33858666  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 153
Target Start/End: Original strand, 1656499 - 1656588
Alignment:
Q  65 ttcatataaaacccgctctcagggtcctcttccacggtttatatgaatatcattttttggaacatt-ggagaattggtaataatgattcc 153  Q
    |||||||||||||||||||||||| ||||||| |   |||| |||||||| |||||||  |||||| || | ||||||||||||||||||    
T  1656499 ttcatataaaacccgctctcagggacctcttctattctttaaatgaatattatttttttaaacattcgggggattggtaataatgattcc 1656588  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 55 - 126
Target Start/End: Original strand, 31924333 - 31924404
Alignment:
Q  55 tgcaaaaagtttcatataaaacccgctctcagggtcctcttccacggtttatatgaatatcattttttggaa 126  Q
    ||||||| ||| |||| |||||||||||||||||||| |  |||| ||||| |||||||| |||| ||||||    
T  31924333 tgcaaaaggttgcatacaaaacccgctctcagggtccccgcccaccgtttaaatgaatattatttattggaa 31924404  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 355
Target Start/End: Original strand, 1656718 - 1656800
Alignment:
Q  273 aataatagggagcctctgattcctgaaatgtgggcggtgtgaggttctgactttgtatatacagtaatttttgtctcttctca 355  Q
    |||| |||||||||||| |||||| |  | ||||  ||||| ||||| || ||||||||||| || |||||||||||||||||    
T  1656718 aatattagggagcctctcattcctaacctctgggttgtgtgcggttcggaatttgtatatactgtgatttttgtctcttctca 1656800  T

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Target: scaffold0073 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0073
Description:

Target: scaffold0073; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 153
Target Start/End: Complemental strand, 40706 - 40606
Alignment:
Q  55 tgcaaaaagtttcatataaaacccgctctcagggtcctcttccacggtttatatgaat-atcattttttggaacatt-ggagaattggtaataatgattc 152  Q
    ||||||| | |||||| ||||||||||||||||||||||||||   ||||| |||||| ||  | |||||||| ||| || | |||||||||||||||||    
T  40706 tgcaaaaggcttcatacaaaacccgctctcagggtcctcttccttcgtttaaatgaataattttgttttggaagattcgggggattggtaataatgattc 40607  T
Q  153 c 153  Q
    |    
T  40606 c 40606  T

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