View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3141A-Insertion-16 (Length: 227)
Name: NF3141A-Insertion-16
Description: NF3141A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3141A-Insertion-16 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 8 - 227
Target Start/End: Original strand, 13311419 - 13311638
Alignment:
| Q |
8 |
atttcattgttattacttaaccggaagtgaagaaacaaatatcttgaatcataaaagttttattaacaaatgagagtaactcttagtgaaacgttacatt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13311419 |
atttcattgttattacttaaccggaagtgaagaaacaaatctcttgaatcataaagttttttttaacaaatgagagtaactcttagtgaaacgttacatt |
13311518 |
T |
|
| Q |
108 |
ttatgtgccacatggtgtatcatgtattatatacacatggtctacccatcagaaaattgacagatttaacacgttacatatatagtttaattctctccca |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
13311519 |
ttatgtgccacatggtgtatcatgtattatatacacatggtctacccatcagaaaattgacagatttaacacattacatatatagtttaattctctccca |
13311618 |
T |
|
| Q |
208 |
tttcctcattcttaatcgtc |
227 |
Q |
| |
|
||| |||||||||||||||| |
|
|
| T |
13311619 |
ttttctcattcttaatcgtc |
13311638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 16534 times since January 2019
Visitors: 3768