View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3141A-Insertion-2 (Length: 410)
Name: NF3141A-Insertion-2
Description: NF3141A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3141A-Insertion-2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 7 - 410
Target Start/End: Original strand, 38880960 - 38881363
Alignment:
| Q |
7 |
agaaagtagttatcataaaatagccaaggaaaatctcaataagataaaagagagttaacttccaaaaagagtaaagaggaaacaaatttgaaagaagagc |
106 |
Q |
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| T |
38880960 |
agaaagtagttatcataaaatagccaaggaaaaactcaataaaataaaagagagttaacttccaaaaagagtaaagaggaaacaaatttgaaagaagagc |
38881059 |
T |
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| Q |
107 |
tcaatgccacaagctgaaattcataaaggaatcaagaaacgctattttgaaaaattcatatcgtaaatattgtcagtgacaaagatattgagtcttgtaa |
206 |
Q |
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| T |
38881060 |
tcaatgccactagctgaaattcataaaggaatcaagaaacgctattttgaaaaattcatatcgtaaatattgtcactgacaaagatattgagtcttgtaa |
38881159 |
T |
|
| Q |
207 |
gtgctcaaatagaaaacaaaaagatttcaacatttggacttatgcttaacacaatctgttacacataaactaaaagaaaatgcacaattcaaaccatatt |
306 |
Q |
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| T |
38881160 |
gtgctcaaatagaaaacaaaaagatttcaacatttggacttatgcttaacacaatctgttacacataaactaaaagaaaatgcacaattcaaatcatatt |
38881259 |
T |
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| Q |
307 |
tttgtgtaggcatgtttcttacacattcatcacaatccttttccgaaactctttcgttttccatctctcggtcgcgatgttggcaacttgcttaccatct |
406 |
Q |
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| T |
38881260 |
tttgtgtaggcatgtttcttacacgttcatcacaatccttttccgaaactctttcgttttccatctctcggtcgcgatgttggcaacttgcttaccatct |
38881359 |
T |
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| Q |
407 |
tcca |
410 |
Q |
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| T |
38881360 |
tcca |
38881363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 196 - 271
Target Start/End: Original strand, 14630748 - 14630823
Alignment:
| Q |
196 |
gagtcttgtaagtgctcaaatagaaaacaaaaagatttcaacatttggacttatgcttaacacaatctgttacaca |
271 |
Q |
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| T |
14630748 |
gagtattgcaagtgctcaagtagaaaacaagaagattttaacatttgaacttatgcttaacacaatctgttacaca |
14630823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 271 - 400
Target Start/End: Original strand, 14630860 - 14630989
Alignment:
| Q |
271 |
ataaactaaaagaaaatgcacaattcaaaccatatttttgtgtaggcatgtttcttacacattcatcacaatccttttccgaaactctttcgttttccat |
370 |
Q |
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| T |
14630860 |
ataaattaaaagagaatgtgcaattcaaatcatatttttgtgtagtcatgtttcttacattttcttcacaacccttttccggttctctttgattttccat |
14630959 |
T |
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| Q |
371 |
ctctcggtcgcgatgttggcaacttgctta |
400 |
Q |
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| T |
14630960 |
ctctcggttggaatgttggcttcttgctta |
14630989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 187 - 270
Target Start/End: Complemental strand, 15621208 - 15621125
Alignment:
| Q |
187 |
aaagatattgagtcttgtaagtgctcaaatagaaaacaaaaagatttcaacatttggacttatgcttaacacaatctgttacac |
270 |
Q |
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| T |
15621208 |
aaagatattgagaattgtaaatgctcgagtagaaaacaaaaagattttaacgtttgaacttatgcttaacacattttgttacac |
15621125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 187 - 270
Target Start/End: Complemental strand, 15644977 - 15644894
Alignment:
| Q |
187 |
aaagatattgagtcttgtaagtgctcaaatagaaaacaaaaagatttcaacatttggacttatgcttaacacaatctgttacac |
270 |
Q |
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| T |
15644977 |
aaagatattgagaattgtaaatgctcgagtagaaaacaaaaagattttaatgtttgaatttatgcttaacacattttgttacac |
15644894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 228 - 271
Target Start/End: Original strand, 16641374 - 16641417
Alignment:
| Q |
228 |
agatttcaacatttggacttatgcttaacacaatctgttacaca |
271 |
Q |
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| T |
16641374 |
agattttaacatttgaacttatgcttaacacaatctgttacaca |
16641417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 303 - 378
Target Start/End: Original strand, 16641487 - 16641562
Alignment:
| Q |
303 |
tatttttgtgtaggcatgtttcttacacattcatcacaatccttttccgaaactctttcgttttccatctctcggt |
378 |
Q |
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| T |
16641487 |
tatttttctgtaggcatgtttcttacattttcttcacagtctttttccggttctctttgattttccatctctcggt |
16641562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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