View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3141A-Insertion-3 (Length: 406)
Name: NF3141A-Insertion-3
Description: NF3141A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3141A-Insertion-3 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 6 - 251
Target Start/End: Complemental strand, 41795763 - 41795516
Alignment:
| Q |
6 |
caatcaattacttattaaaaaagaaatttggcatgtaaacttgctctttgttaatatggggaaatctttgcaaaatttaatggatgcatacatctaaaat |
105 |
Q |
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| T |
41795763 |
caatcaattacttattaaaaaagaaatttggcatgtaaacttgctctttgttaatatggggaaatctttgcaaaatttaatggatgcatacatctaaaat |
41795664 |
T |
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| Q |
106 |
agcatgatcaaaagaaagaagatcatggtt--ttgttgcttaaatcaaaccatgattaaatgccgtctagcatcaattctaagatcttctttcatctttc |
203 |
Q |
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| T |
41795663 |
agcatgatcaaaagaaagaagatcatggttgctgtttacttaaatcaaaccatgactaaatgccgtctagcatcaattcttagatcttctttcatctttc |
41795564 |
T |
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| Q |
204 |
taatgaaatcttcaaattttttgtttaactcttcagtacttagcacac |
251 |
Q |
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| T |
41795563 |
taatgaaatcttcgaattttttgtttaactcttctgtacttaacacac |
41795516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 23 - 253
Target Start/End: Complemental strand, 41760968 - 41760725
Alignment:
| Q |
23 |
aaaaagaaatttggcatgtaaacttgctctttgttaatatggggaaatctttgcaaaatttaatggatgcatacatctaa-------aata------gca |
109 |
Q |
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| T |
41760968 |
aaaaagaaatttggcatggaaacttgctctttgttaatatctg-aaatctttgcaaaatttaatggatgcatacatctaatttctaaaatacaagaagca |
41760870 |
T |
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| Q |
110 |
tgatcaaaagaaagaagatcatgg-ttttgttgcttaaatcaaaccatgattaaatgccgtctagcatcaattctaagatcttctttcatctttctaatg |
208 |
Q |
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| T |
41760869 |
tgatcaaaagaaagaagatcatgggttttgttgcttaaatcaaaccatgattaaatgccgtctagcatcaattctaagatcttctttcatctttctaatg |
41760770 |
T |
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| Q |
209 |
aaatcttcaaattttttgtttaactcttcagtacttagcacacaa |
253 |
Q |
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| T |
41760769 |
aaatcttcaaattttttgtttaactcttctgtacttagcacacaa |
41760725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 322 - 397
Target Start/End: Complemental strand, 41795457 - 41795382
Alignment:
| Q |
322 |
aattagaatgtaatcaatttccgacaatttatctccatcttcatcatctgcatcaaatagttcaacttcttcttct |
397 |
Q |
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| T |
41795457 |
aattagaatgtaatcaatttccgaccctttatctccgtcttcatcatctgcatcaaatagttcaacttcttcttct |
41795382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 322 - 394
Target Start/End: Complemental strand, 41760656 - 41760584
Alignment:
| Q |
322 |
aattagaatgtaatcaatttccgacaatttatctccatcttcatcatctgcatcaaatagttcaacttcttct |
394 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||| |
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| T |
41760656 |
aattagaatgtaatcaatttccgacaatttatctccctcatcatcatgtgcatcaaatagttcaacttcttct |
41760584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 194 - 249
Target Start/End: Complemental strand, 23507455 - 23507400
Alignment:
| Q |
194 |
ttcatctttctaatgaaatcttcaaattttttgtttaactcttcagtacttagcac |
249 |
Q |
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| T |
23507455 |
ttcatctttttaatgaagtcatcaaattttttgttcaactcctcagtgcttagcac |
23507400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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