View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3141A-Insertion-4 (Length: 400)
Name: NF3141A-Insertion-4
Description: NF3141A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3141A-Insertion-4 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 47 - 400
Target Start/End: Original strand, 9662176 - 9662539
Alignment:
| Q |
47 |
attagtttttcagaaacgtggttctttacgtatcggtgcaaaattattacaccaataattgatgaataaacatca-------cagtgacaaaatcacatg |
139 |
Q |
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| T |
9662176 |
attagtttttcagaaacgtggttctttacgtatcggtgcaaaattattacaccaataattgatgaataaacatcatgactcacagtgacaaaatcacatg |
9662275 |
T |
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| Q |
140 |
aaccacactacgaaattttcttctagtcaaattatttatt---ccttgacttgatggccactaaaatttctagtannnnnnnn-gtcaaccttttagttt |
235 |
Q |
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| T |
9662276 |
aaccacactacgaaattttcttctagtcaaattatttattaatccttgacttgatggccactaaaatttctagtatttttttttgttaaccttttagttt |
9662375 |
T |
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| Q |
236 |
ttaagggtagggagccttagtaatctagagtttaattggaaggtgtgtaaagtctgactaataattattccacctaaaaattgaaatcaggttcaacaat |
335 |
Q |
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| T |
9662376 |
ttaaggatagggggccttagtaatctagagtttaatcggaaggtgtgtaaagtctgactaataattattccacttaaaaattgaaatcaggttcaacaat |
9662475 |
T |
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| Q |
336 |
tcgnnnnnnnagtaaaactcatagacaacttgaatttaattgtttgattaaataaatttctagca |
400 |
Q |
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| T |
9662476 |
tcg-ttctttagtaaaactcataaacaatttgaatttaattgtttggttaaataaatttctagca |
9662539 |
T |
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