View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3141A-Insertion-6 (Length: 265)
Name: NF3141A-Insertion-6
Description: NF3141A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3141A-Insertion-6 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 144; Significance: 8e-76; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 118 - 265
Target Start/End: Original strand, 38625127 - 38625274
Alignment:
| Q |
118 |
gtctgtcatgtaaggtattattcccacaacaatgattatcttgaaatttgccgctgctataaggcaatatatgagattccgtccatcaaagaaaaccctg |
217 |
Q |
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| T |
38625127 |
gtctgtgatgtaaggtattattcccacaacaatgattatcttgaaatttgccgctgctataaggcaatatatgagattccgtccatcaaagaaaaccctg |
38625226 |
T |
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| Q |
218 |
ctgattttattcctgtaagctttctattctctttctttatttgctatc |
265 |
Q |
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| T |
38625227 |
ctgattttattcctgtaagctttctattctctttctttatttgctatc |
38625274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 130 - 265
Target Start/End: Original strand, 38650188 - 38650323
Alignment:
| Q |
130 |
aggtattattcccacaacaatgattatcttgaaatttgccgctgctataaggcaatatatgagattccgtccatcaaagaaaaccctgctgattttattc |
229 |
Q |
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| T |
38650188 |
aggtattattcccacaacaatgattatcttgaaatttgccgctgctataaggcaatatatgagattccgtccatcaaagaaaaccctgctgattttattc |
38650287 |
T |
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| Q |
230 |
ctgtaagctttctattctctttctttatttgctatc |
265 |
Q |
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| T |
38650288 |
ctgtcagctttctattctctttctttatttgctatc |
38650323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 38625019 - 38625101
Alignment:
| Q |
8 |
atgagtgcatgtttattttatcttcatgctgcatatttttcaagtacggggttcatgatatttcttacggctgatcctgaaac |
90 |
Q |
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| T |
38625019 |
atgagtgcatgtttattttatcttcatgctgcatatttttcaagtacggggttcatgatatttcttacagctgatcctgaaac |
38625101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 38650071 - 38650150
Alignment:
| Q |
8 |
atgagtgcatgtttattttatcttcatgctgcatatttttcaagtacggggttcatgatatttcttacggctgatcctga |
87 |
Q |
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| T |
38650071 |
atgagtgcatgtttattttatcttcatgctacatatttttctagtttgtggttcatgatatttcttactgctgatcctga |
38650150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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