View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3210-1-Insertion-1 (Length: 642)

Name: NF3210-1-Insertion-1
Description: NF3210-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3210-1-Insertion-1
NF3210-1-Insertion-1
[»] scaffold0320 (1 HSPs)
scaffold0320 (158-642)||(17276-17760)
[»] chr2 (9 HSPs)
chr2 (103-642)||(28122050-28122599)
chr2 (8-90)||(28121986-28122068)
chr2 (60-138)||(19173191-19173269)
chr2 (60-137)||(19178227-19178304)
chr2 (84-127)||(21428925-21428968)
chr2 (103-142)||(28122100-28122139)
chr2 (73-126)||(14744375-14744428)
chr2 (83-127)||(3675278-3675322)
chr2 (86-122)||(38227278-38227314)
[»] chr5 (6 HSPs)
chr5 (83-142)||(421780-421839)
chr5 (61-138)||(24127322-24127397)
chr5 (511-550)||(34816346-34816385)
chr5 (155-233)||(421782-421859)
chr5 (83-137)||(37160716-37160770)
chr5 (83-145)||(38504112-38504174)
[»] chr3 (4 HSPs)
chr3 (68-134)||(52017634-52017700)
chr3 (57-136)||(50497742-50497821)
chr3 (167-224)||(47232730-47232785)
chr3 (84-118)||(54254099-54254133)
[»] chr1 (5 HSPs)
chr1 (66-138)||(32478724-32478796)
chr1 (71-137)||(40663491-40663557)
chr1 (158-233)||(40663482-40663557)
chr1 (72-123)||(6366428-6366479)
chr1 (84-122)||(42803112-42803150)
[»] chr8 (5 HSPs)
chr8 (155-233)||(43345185-43345263)
chr8 (84-137)||(33726458-33726511)
chr8 (65-127)||(18048052-18048114)
chr8 (200-233)||(18048264-18048297)
chr8 (200-233)||(18048049-18048082)
[»] chr6 (2 HSPs)
chr6 (71-121)||(32576183-32576233)
chr6 (94-127)||(26485068-26485101)
[»] chr7 (1 HSPs)
chr7 (74-122)||(47510371-47510419)
[»] chr4 (2 HSPs)
chr4 (101-137)||(1338304-1338340)
chr4 (72-112)||(42403359-42403399)


Alignment Details
Target: scaffold0320 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 158 - 642
Target Start/End: Original strand, 17276 - 17760
Alignment:
Q  158 ttttagttgattttaatagtttagggacctaattgacaaggaagtgatagtttaaggactaaattgactgtttattatggtgtgtttggatacaatttta 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  17276 ttttagttgattttaatagtttagggacctaattgacaaggaagtgatagtttaaggactaaattgactgtttattacggtgtgtttggatacaatttta 17375  T
Q  258 ttaactgatgtaaatggaataggttgatttcccgtgcattttttgtgctattagatagtgtatataggaagtttattcctccttttactcaactgttatt 357  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17376 ttaactgatgtaaatggaataggttgatttcccgtgcattttttgtgctattagatagtgtatataggaagtttattcctccttttactcaactgttatt 17475  T
Q  358 ggaattgtacagcatcaaatgcaaacaagcccttagttttatgctctgtagcatgggacccttagtctttcgatgggagatgaatttttatttgttatat 457  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17476 ggaattgtacagcatcaaatgcaaacaagcccttagttttatgctctgtagcatgggacccttagtctttcgatgggagatgaatttttatttgttatat 17575  T
Q  458 gttcaacatgtgtttttaaagcatgtaacaagttcaagcggtagccaagcgataggggagtcaaaaacttgatcaatggttcacttaggatattgacaga 557  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17576 gttcaacatgtgtttttaaagcatgtaacaagttcaagctgtagccaagcgataggggagtcaaaaacttgatcaatggttcacttaggatattgacaga 17675  T
Q  558 agaactaattttagtgacaagactgtaatagcagtgacaaattgtccttgtgatatttgttctctggtttaacctctgatatgca 642  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17676 agaactaattttagtgacaagactgtaatagcagtgacaaattgtccttgtgatatttgttctctggtttaacctctgatatgca 17760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 367; Significance: 0; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 103 - 642
Target Start/End: Original strand, 28122050 - 28122599
Alignment:
Q  103 caatttagtccctaaactattaaaaccaactaaaagatccttactaaagggaatcttttagttgattttaatagtttagggacctaattgacaaggaagt 202  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  28122050 caatttagttcctaaactaataaaaccaactaaaagatccttactgaaggggatcttttagttgattttaatagtttagggaccaaattgacaaggaagt 28122149  T
Q  203 gatagtttaaggactaaattgactgtttattatggtgtgtttggatacaattttattaactgatgtaaatggaataggttgatttcccgtgcattttttg 302  Q
    |||||| ||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  28122150 gatagtctaaggactaaattgactgtttattacggtgtgtttggttacgattttattaactgatgtaaatggaataggttgatttccggtgcactttttg 28122249  T
Q  303 tgctattagatagtgtatataggaagtttattcctccttttactcaactgttattggaattgtacagcatcaaatgcaaacaagcccttagttttatgct 402  Q
    ||||  ||||||  ||||||||||||||||||||||||||| || |||| |  ||||||||||||| |||| ||||||||||| ||||||||||||||||    
T  28122250 tgctgatagata--gtatataggaagtttattcctccttttgcttaactatcgttggaattgtacaacatctaatgcaaacaatcccttagttttatgct 28122347  T
Q  403 ctgtagc-atgggacccttagtctttcgatgggagatgaatttttatttgttatatgttcaacatgtgtttttaaagcatgtaacaagttcaagcggtag 501  Q
    ||||||| |||  |||||||| ||||||||||| ||||| |||||||||||||| |||||||||| |||||||| |||||||||||||||||||  ||||    
T  28122348 ctgtagcgatgcaacccttagactttcgatgggggatgagtttttatttgttatgtgttcaacatatgtttttatagcatgtaacaagttcaagttgtag 28122447  T
Q  502 cc-----------aagcgataggggagtcaaaaacttgatcaatggttcacttaggatattgacagaagaactaattttagtgacaagactgtaatagca 590  Q
    ||           |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28122448 ccattagaccaagaagctataggggagtcaaaaacttgatcaatggttcacttaggatattgacagaagaactaattttagtgacaagactgtaatagca 28122547  T
Q  591 gtgacaaattgtccttgtgatatttgttctctggtttaacctctgatatgca 642  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28122548 gtgacaaattgtccttgtgatatttgttctctggtttaacctctgatatgca 28122599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 28121986 - 28122068
Alignment:
Q  8 tccttgctatcgggatagttacacggtaaacaagaccttttactaattgaattgaacaaacattcaatttagttactaaacta 90  Q
    ||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  28121986 tccttgctatcaggatagttacatggtacacaagaccttttactaattgaattgaacaaacattcaatttagttcctaaacta 28122068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 138
Target Start/End: Complemental strand, 19173269 - 19173191
Alignment:
Q  60 tgaacaaacattcaatttagttactaaactatcactctctcaccaatttagtccctaaactattaaaaccaactaaaag 138  Q
    |||| |||||||||||||| |  ||||| ||||||||| |||||||||| |||| | |||||||||||  |||||||||    
T  19173269 tgaataaacattcaatttaatctctaaattatcactctatcaccaattttgtccatgaactattaaaattaactaaaag 19173191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 60 - 137
Target Start/End: Complemental strand, 19178304 - 19178227
Alignment:
Q  60 tgaacaaacattcaatttagttactaaactatcactctctcaccaatttagtccctaaactattaaaaccaactaaaa 137  Q
    |||| |||||||||||||| |  ||||||||||||||| ||||| |||| |||| | || |||||||| |||||||||    
T  19178304 tgaataaacattcaatttaatcgctaaactatcactctatcacctatttcgtccatgaattattaaaatcaactaaaa 19178227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 127
Target Start/End: Complemental strand, 21428968 - 21428925
Alignment:
Q  84 taaactatcactctctcaccaatttagtccctaaactattaaaa 127  Q
    ||||||||||||||| | ||||||||||||||||||||| ||||    
T  21428968 taaactatcactctcacgccaatttagtccctaaactataaaaa 21428925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 142
Target Start/End: Complemental strand, 28122139 - 28122100
Alignment:
Q  103 caatttagtccctaaactattaaaaccaactaaaagatcc 142  Q
    |||||| |||||||||||||||||| ||||||||||||||    
T  28122139 caatttggtccctaaactattaaaatcaactaaaagatcc 28122100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 126
Target Start/End: Complemental strand, 14744428 - 14744375
Alignment:
Q  73 aatttagttactaaactatcactctctcaccaatttagtccctaaactattaaa 126  Q
    |||||||||  |||| ||||||||| ||||||||||||| | ||||||||||||    
T  14744428 aatttagtttttaaattatcactctatcaccaatttagttcataaactattaaa 14744375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 83 - 127
Target Start/End: Original strand, 3675278 - 3675322
Alignment:
Q  83 ctaaactatcactctctcaccaatttagtccctaaactattaaaa 127  Q
    |||||||||||| ||| |||||||||||||| |||||||| ||||    
T  3675278 ctaaactatcacactcccaccaatttagtccttaaactataaaaa 3675322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 86 - 122
Target Start/End: Original strand, 38227278 - 38227314
Alignment:
Q  86 aactatcactctctcaccaatttagtccctaaactat 122  Q
    ||||||||  |||||||||||||||||||||||||||    
T  38227278 aactatcaacctctcaccaatttagtccctaaactat 38227314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 83 - 142
Target Start/End: Complemental strand, 421839 - 421780
Alignment:
Q  83 ctaaactatcactctctcaccaatttagtccctaaactattaaaaccaactaaaagatcc 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  421839 ctaaactatcactctctcaccaatttagtccctaaactattaaaatcaactaagagatcc 421780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 61 - 138
Target Start/End: Complemental strand, 24127397 - 24127322
Alignment:
Q  61 gaacaaacattcaatttagttactaaactatcactctctcaccaatttagtccctaaactattaaaaccaactaaaag 138  Q
    ||||||||| | ||||| ||  ||||||||||||||||  ||| |||||||| |||||||||||||| ||||||||||    
T  24127397 gaacaaacagttaatttggtccctaaactatcactctc--accgatttagtctctaaactattaaaatcaactaaaag 24127322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 511 - 550
Target Start/End: Original strand, 34816346 - 34816385
Alignment:
Q  511 aggggagtcaaaaacttgatcaatggttcacttaggatat 550  Q
    |||||||||||||||||||||||| ||||| |||||||||    
T  34816346 aggggagtcaaaaacttgatcaatagttcaattaggatat 34816385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 155 - 233
Target Start/End: Original strand, 421782 - 421859
Alignment:
Q  155 atcttttagttgattttaatagtttagggacctaattgacaaggaagtgatagtttaaggactaaattgactgtttatt 233  Q
    |||| ||||||||||||||||||||||||||  |||||   ||  |||||||||||| ||| | |||||||||||||||    
T  421782 atctcttagttgattttaatagtttagggactaaattggtgagagagtgatagtttaggga-tcaattgactgtttatt 421859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 83 - 137
Target Start/End: Complemental strand, 37160770 - 37160716
Alignment:
Q  83 ctaaactatcactctctcaccaatttagtccctaaactattaaaaccaactaaaa 137  Q
    ||||||||||| ||||||   ||||||||| |||||||||||||| |||||||||    
T  37160770 ctaaactatcattctctcgttaatttagtctctaaactattaaaatcaactaaaa 37160716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 83 - 145
Target Start/End: Complemental strand, 38504174 - 38504112
Alignment:
Q  83 ctaaactatcactctctcaccaatttagtccctaaactattaaaaccaactaaaagatcctta 145  Q
    ||||||||||| ||| | | ||| ||| ||||||||||||||||| ||||||||| |||||||    
T  38504174 ctaaactatcattcttttatcaagttaatccctaaactattaaaatcaactaaaatatcctta 38504112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 68 - 134
Target Start/End: Original strand, 52017634 - 52017700
Alignment:
Q  68 cattcaatttagttactaaactatcactctctcaccaatttagtccctaaactattaaaaccaacta 134  Q
    |||||||||||||  ||||||||||| ||||||| ||| ||||||||||||||||||||| ||||||    
T  52017634 cattcaatttagtccctaaactatcattctctcaacaaattagtccctaaactattaaaatcaacta 52017700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 57 - 136
Target Start/End: Original strand, 50497742 - 50497821
Alignment:
Q  57 aattgaacaaacattcaatttagttactaaactatcactctctcaccaatttagtccctaaactattaaaaccaactaaa 136  Q
    ||||||||||||||| |||||| || ||||||||||||| ||||| ||||||  |||||||| | | ||| |||||||||    
T  50497742 aattgaacaaacatttaatttaattcctaaactatcactttctcatcaatttgatccctaaattttaaaacccaactaaa 50497821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 167 - 224
Target Start/End: Original strand, 47232730 - 47232785
Alignment:
Q  167 attttaatagtttagggacctaattgacaaggaagtgatagtttaaggactaaattga 224  Q
    ||||| |||||||||||||  |||||| ||  ||||||||||||||||||||||||||    
T  47232730 atttttatagtttagggactaaattgaaaa--aagtgatagtttaaggactaaattga 47232785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 84 - 118
Target Start/End: Complemental strand, 54254133 - 54254099
Alignment:
Q  84 taaactatcactctctcaccaatttagtccctaaa 118  Q
    ||||||||||||||||| |||||||||||||||||    
T  54254133 taaactatcactctctctccaatttagtccctaaa 54254099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 66 - 138
Target Start/End: Original strand, 32478724 - 32478796
Alignment:
Q  66 aacattcaatttagttactaaactatcactctctcaccaatttagtccctaaactattaaaaccaactaaaag 138  Q
    |||| ||||||| ||  ||||||||||| |||| |||||||||||||| ||||||||||||| ||||||||||    
T  32478724 aacactcaatttcgtccctaaactatcagtctcccaccaatttagtccataaactattaaaatcaactaaaag 32478796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 137
Target Start/End: Original strand, 40663491 - 40663557
Alignment:
Q  71 tcaatttagttactaaactatcactctctcaccaatttagtccctaaactattaaaaccaactaaaa 137  Q
    ||||||||||   ||||||||| ||||||||||||||| || ||||||||||||||| |||||||||    
T  40663491 tcaatttagtccataaactatcgctctctcaccaatttggttcctaaactattaaaatcaactaaaa 40663557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 158 - 233
Target Start/End: Complemental strand, 40663557 - 40663482
Alignment:
Q  158 ttttagttgattttaatagtttagggacctaattgacaaggaagtgatagtttaaggactaaattgactgtttatt 233  Q
    ||||||||||||||||||||||||| ||| |||||   ||  || ||||||||| |||||||||||||||| ||||    
T  40663557 ttttagttgattttaatagtttaggaaccaaattggtgagagagcgatagtttatggactaaattgactgtctatt 40663482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 123
Target Start/End: Complemental strand, 6366479 - 6366428
Alignment:
Q  72 caatttagttactaaactatcactctctcaccaatttagtccctaaactatt 123  Q
    |||||||||  ||| |||||||||  ||||||||||||||||||||||||||    
T  6366479 caatttagtccctatactatcacttcctcaccaatttagtccctaaactatt 6366428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 84 - 122
Target Start/End: Original strand, 42803112 - 42803150
Alignment:
Q  84 taaactatcactctctcaccaatttagtccctaaactat 122  Q
    |||||||||| |||||||||||||||||| |||||||||    
T  42803112 taaactatcattctctcaccaatttagtctctaaactat 42803150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 233
Target Start/End: Original strand, 43345185 - 43345263
Alignment:
Q  155 atcttttagttgattttaatagtttagggacctaattgacaaggaagtgatagtttaaggactaaattgactgtttatt 233  Q
    |||||||| |||||||||||||||||| |||| ||||||| ||   || |||||||||||| |||||||||| ||||||    
T  43345185 atcttttaattgattttaatagtttagagaccaaattgacgagagggttatagtttaaggattaaattgactatttatt 43345263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 84 - 137
Target Start/End: Original strand, 33726458 - 33726511
Alignment:
Q  84 taaactatcactctctcaccaatttagtccctaaactattaaaaccaactaaaa 137  Q
    |||||||||||||||||||||||||||||  |||||||||||||  ||||||||    
T  33726458 taaactatcactctctcaccaatttagtcattaaactattaaaataaactaaaa 33726511  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 127
Target Start/End: Original strand, 18048052 - 18048114
Alignment:
Q  65 aaacattcaatttagttactaaactatcactctctcaccaatttagtccctaaactattaaaa 127  Q
    ||||| ||||||||||  ||||||||||||||| |||||||||| | |||| |||||||||||    
T  18048052 aaacagtcaatttagtccctaaactatcactctatcaccaatttggcccctgaactattaaaa 18048114  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 200 - 233
Target Start/End: Original strand, 18048264 - 18048297
Alignment:
Q  200 agtgatagtttaaggactaaattgactgtttatt 233  Q
    ||||||||||||||||||||||||||||||||||    
T  18048264 agtgatagtttaaggactaaattgactgtttatt 18048297  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 233
Target Start/End: Complemental strand, 18048082 - 18048049
Alignment:
Q  200 agtgatagtttaaggactaaattgactgtttatt 233  Q
    |||||||||||| |||||||||||||||||||||    
T  18048082 agtgatagtttagggactaaattgactgtttatt 18048049  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 121
Target Start/End: Complemental strand, 32576233 - 32576183
Alignment:
Q  71 tcaatttagttactaaactatcactctctcaccaatttagtccctaaacta 121  Q
    ||||||||||  ||||||||||| |||||| ||||||||||||||||||||    
T  32576233 tcaatttagtccctaaactatcagtctctctccaatttagtccctaaacta 32576183  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 127
Target Start/End: Original strand, 26485068 - 26485101
Alignment:
Q  94 ctctctcaccaatttagtccctaaactattaaaa 127  Q
    ||||||||||||||| ||||||||||||||||||    
T  26485068 ctctctcaccaatttggtccctaaactattaaaa 26485101  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 74 - 122
Target Start/End: Complemental strand, 47510419 - 47510371
Alignment:
Q  74 atttagttactaaactatcactctctcaccaatttagtccctaaactat 122  Q
    |||||||  ||||| |||||||||||||| ||||||||||| |||||||    
T  47510419 atttagtctctaaattatcactctctcactaatttagtccccaaactat 47510371  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 101 - 137
Target Start/End: Complemental strand, 1338340 - 1338304
Alignment:
Q  101 accaatttagtccctaaactattaaaaccaactaaaa 137  Q
    ||||||||| ||||||||||||||||| |||||||||    
T  1338340 accaatttaatccctaaactattaaaatcaactaaaa 1338304  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 72 - 112
Target Start/End: Original strand, 42403359 - 42403399
Alignment:
Q  72 caatttagttactaaactatcactctctcaccaatttagtc 112  Q
    |||||||||  |||||||||||||||||| |||||||||||    
T  42403359 caatttagtccctaaactatcactctctctccaatttagtc 42403399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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