View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3210-1-Insertion-6 (Length: 61)
Name: NF3210-1-Insertion-6
Description: NF3210-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3210-1-Insertion-6 |
 | |
|
| [»] chr3 (4 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
| [»] chr1 (4 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 42; Significance: 0.000000000000001; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 6456539 - 6456592
Alignment:
| Q |
8 |
gtagtacagattaggaagaggtaaaaacaaaggcggcttaggatttagaagctt |
61 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
6456539 |
gtagcacagattgggaagaggtaaaaacaaaggcggcttaggatttagaggctt |
6456592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 6760308 - 6760255
Alignment:
| Q |
8 |
gtagtacagattaggaagaggtaaaaacaaaggcggcttaggatttagaagctt |
61 |
Q |
| |
|
|||| ||||||| |||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
6760308 |
gtagcacagattgggaagaggtaaaaataaaggcggcttaggatttagaggctt |
6760255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.000000000004
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 407093 - 407136
Alignment:
| Q |
13 |
acagattaggaagaggtaaaaacaaaggcggcttaggatttaga |
56 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
407093 |
acagattgggaagaggtaaaaacaaaggtggcttaggatttaga |
407136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.000000000004
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 416849 - 416806
Alignment:
| Q |
13 |
acagattaggaagaggtaaaaacaaaggcggcttaggatttaga |
56 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
416849 |
acagattgggaagaggtaaaaacaaaggtggcttaggatttaga |
416806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.000000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.000000000000004
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 39676190 - 39676238
Alignment:
| Q |
8 |
gtagtacagattaggaagaggtaaaaacaaaggcggcttaggatttaga |
56 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
39676190 |
gtaggacagattgggaagaggtaaaaacaaaggcggcttaggatttaga |
39676238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.000000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.000000000000004
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 7197054 - 7197006
Alignment:
| Q |
13 |
acagattaggaagaggtaaaaacaaaggcggcttaggatttagaagctt |
61 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
7197054 |
acagattgggaagaggtaaaaacaaaggcggcttaggatttagaggctt |
7197006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.000000000004
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 24183576 - 24183619
Alignment:
| Q |
13 |
acagattaggaagaggtaaaaacaaaggcggcttaggatttaga |
56 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
24183576 |
acagattgggaagaggtaaaaacaaaggtggcttaggatttaga |
24183619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.000000000004; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.000000000004
Query Start/End: Original strand, 14 - 61
Target Start/End: Complemental strand, 7276747 - 7276700
Alignment:
| Q |
14 |
cagattaggaagaggtaaaaacaaaggcggcttaggatttagaagctt |
61 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
7276747 |
cagatttggaagaggtaaaaacaaaggcggcttaggaattagaggctt |
7276700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.000000000004
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 24346432 - 24346389
Alignment:
| Q |
13 |
acagattaggaagaggtaaaaacaaaggcggcttaggatttaga |
56 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
24346432 |
acagattgggaagaggtaaaaacaaaggtggcttaggatttaga |
24346389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.000000000004
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 24358704 - 24358661
Alignment:
| Q |
13 |
acagattaggaagaggtaaaaacaaaggcggcttaggatttaga |
56 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
24358704 |
acagattgggaagaggtaaaaacaaaggtggcttaggatttaga |
24358661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 4204059 - 4204099
Alignment:
| Q |
21 |
ggaagaggtaaaaacaaaggcggcttaggatttagaagctt |
61 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
4204059 |
ggaagaggtaaaaacaaaggcagcttaggatttagaggctt |
4204099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3500 times since January 2019
Visitors: 8698