View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3704-Insertion-2 (Length: 920)
Name: NF3704-Insertion-2
Description: NF3704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3704-Insertion-2 |
 | |
|
| [»] chr5 (10 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 827; Significance: 0; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 827; E-Value: 0
Query Start/End: Original strand, 8 - 920
Target Start/End: Complemental strand, 29945280 - 29944371
Alignment:
| Q |
8 |
ggtattgcgtgtaagtgttgagctctatgtatagattgtccaaatttctcatccatgttcaaattagaaggactaatattatatggaagtttccaattaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29945280 |
ggtattgcgtgtaagtgttgagctctatgtatagattgtccaaatttctcatccatgttcaaattagaaggactaatattatatggaagtttccaattaa |
29945181 |
T |
|
| Q |
108 |
agcaatgcaccaattgagctatgcctaacctaacagtcctcaaagccaattgaattccagggcaacgcctacgaccaaatccaaatggtatactttcaaa |
207 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29945180 |
agcaatgcaccaattgagctatgcttaacctaacagtcctcaaagccaattgaattccagggcaacgcctacgaccaaatccaaatggtatactttcaaa |
29945081 |
T |
|
| Q |
208 |
ctcttgtccttcataattcaatttcttgttaataaacctctctggacaaaattcttcagcattttctgaccaaacattaggatctctcgctattgtaaat |
307 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29945080 |
ctcttgtccttcataattcaatttcttattaataaacctctctggacaaaattcttcagcattttctgaccaaacattaggatctctcgctattgtaaat |
29944981 |
T |
|
| Q |
308 |
gcatttactataactcgtgtcttttcctttacaaaataaccatcaattgttatgttctctctacattcacgagggagtaagaagggtgaaactggatgaa |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29944980 |
gcatttactataactcgtgtcttttcctttacaaaataaccatcaattgttatgttctctctacattcacgagggagtaagaagggtgaaactggatgaa |
29944881 |
T |
|
| Q |
408 |
gtcttaaagtttcatcaacaaccatatctaagtaattaaaattcttcaaatccttctcttcaaccattctcttatttcctacttcattttgtatttcatc |
507 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29944880 |
gtcttaaagtttcatcaaccaccatatctaagtaattaaaattcttcaaatccttttcttcaaccattctcttatttcctacttcattttgtatttcatc |
29944781 |
T |
|
| Q |
508 |
ttgaagatttttcatcactcttggatgccttaaaagttcggataaagcccactcaattgtggtagcagatgtactaaatgatgccacaaccatgtctagt |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29944780 |
ttgaagatttttcatcactcttggatgccttaaaagttcggataaagcccactcaattgtggtagcagatgtactaaatgatgccacaaccatgtctagt |
29944681 |
T |
|
| Q |
608 |
aaaatagctttgatgttagttcgatcaatgacatgattttgttcactcccatgatcaatgttttggtgcataaaagtgagaagtatgtctacaaagtctt |
707 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
29944680 |
aaaatagctttgatgttagttcgatcaatgacatgattttgttcactcccatgatcaatgttttggtgcttaaaagtgagaagtatgtctacaaagtctt |
29944581 |
T |
|
| Q |
708 |
catgacggagttttgtctgtattagtggtttgttcatgctctgatattatcatctccaacacatcatcaagtgctttgttggttcttttgcaggctcgtg |
807 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
29944580 |
catgac-gagttttgtctgtattagtggtttgttcatgctctgatattatcatctccaacacctcatcaagtgctttgttggttcttttgcaggctcgt- |
29944483 |
T |
|
| Q |
808 |
gttaagccctaacaaatagtcaaattgataacggttaatttctaattgaatatttttcagttaacttaatgaaaaccat-aatgttttatttg-ttttaa |
905 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||| |||||| ||||||||||||| |||||| |
|
|
| T |
29944482 |
gttaagccctaacaaatagtcaaattgataac-gttaatttctaattgaata-ttttcagtgaacttaatg-gaaccataaatgttttatttgtttttaa |
29944386 |
T |
|
| Q |
906 |
aactgaaaacattaa |
920 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
29944385 |
aactgaaaacattaa |
29944371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 8 - 823
Target Start/End: Complemental strand, 30007761 - 30006948
Alignment:
| Q |
8 |
ggtattgcgtgtaagtgttgagctctatgtatagattgtccaaatttctcatccatgttcaaattagaaggactaatattatatggaagtttccaattaa |
107 |
Q |
| |
|
|||||||| || || || |||||||| ||||||| ||||||||||||| ||||| |||||||| |||||||||||||||| |||||||| ||| |||| |
|
|
| T |
30007761 |
ggtattgcctgcaaatgctgagctcttggtatagagagtccaaatttctcctccatattcaaattggaaggactaatattatgtggaagttcccagttaa |
30007662 |
T |
|
| Q |
108 |
agcaatgcaccaattgagctatgcctaacctaacagtcctcaaagccaattgaattccagggcaacgcctacgaccaaatccaaatggtatactttcaaa |
207 |
Q |
| |
|
|||||||||| ||||||||||| | ||| |||| | | ||| |||||||||||||||| ||||||||||||||| | |||||||||||| |||||| |
|
|
| T |
30007661 |
agcaatgcacaaattgagctataaccaacttaacgataattaaacccaattgaattccaggacaacgcctacgaccagaaccaaatggtatagattcaaa |
30007562 |
T |
|
| Q |
208 |
ctcttgtccttcataattcaatttcttgttaataaacctctctggacaaaattcttcagcattttctgaccaaacattaggatctctcgctattgtaaat |
307 |
Q |
| |
|
||| ||||||| |||||||| |||||||| |||||| |||||||| ||||||| |||||||||||||||||||| ||| ||||||| | || | || |
|
|
| T |
30007561 |
ctcatgtccttgataattcattttcttgtcaataaatctctctgggtaaaattcatcagcattttctgaccaaacgttacaatctctcccaatagcccat |
30007462 |
T |
|
| Q |
308 |
gcatttactataactcgtgtcttttcctttacaaaataaccatcaattgttatgttctctctacattcacgagggagtaagaagggtgaaactggatgaa |
407 |
Q |
| |
|
||||||||||||||||| ||||||| | ||| |||||| ||||||||||||||| ||||||||||||||||||||| ||| |||||| ||| |||| || |
|
|
| T |
30007461 |
gcatttactataactcgagtctttttcgttataaaatatccatcaattgttatgctctctctacattcacgagggattaataagggtccaacaggataaa |
30007362 |
T |
|
| Q |
408 |
gtcttaaagtttcatcaacaaccatatctaagtaattaaaattcttcaaatccttctcttcaaccattctcttatttcctacttcattttgtatttcatc |
507 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
30007361 |
gtcttaaggtttcatcaacaaccatatctaagtaattaaacttcttcagatccttctcttcaaccattcttttatttcctacttcattttgtatctcatc |
30007262 |
T |
|
| Q |
508 |
ttgaagatttttcatcactcttggatgccttaaaagttcggataaagcccactcaattgtggtagcagatgtactaaatgatgccacaaccatgtctagt |
607 |
Q |
| |
|
||||||| ||||||||||||||| |||||||| |||||| ||||||||||||||||| ||||||||||||||| || ||||||| | | |||||| || |
|
|
| T |
30007261 |
ttgaagaattttcatcactcttgaatgccttagaagttcagataaagcccactcaatcgtggtagcagatgtatgaactgatgccgctatcatgtcgagc |
30007162 |
T |
|
| Q |
608 |
aaaatagctttgatgttagttcgatcaatgacatgattttgttcactcccatgatcaatgttttggtgcataaaagtgagaagtatgtctacaaagtctt |
707 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||||||||| | | ||||||| |||||||||||| | |||||||||||||||||||||| |
|
|
| T |
30007161 |
aaaatagccttgatgttagttcgatcaatgacgagattttgttcaccctcgacatcaatggtttggtgcataattgaaagaagtatgtctacaaagtctt |
30007062 |
T |
|
| Q |
708 |
catgacggagttttgtctgtattagtggtttgttcatgctctgatattatcatctccaacacatcatcaagtgctttgttggttcttttgcaggctcgtg |
807 |
Q |
| |
|
||| || |||||||||| |||||||| || ||||| ||||||| ||||||||||||||| || ||||| || ||||| ||||| ||||||| |||||| |
|
|
| T |
30007061 |
cattac-gagttttgtcagtattagtagtctgttcgtgctctgttattatcatctccaaaacctcatcgagggctttactggtttttttgcaagctcgt- |
30006964 |
T |
|
| Q |
808 |
gttaagccctaacaaa |
823 |
Q |
| |
|
||||| |||||||||| |
|
|
| T |
30006963 |
gttaatccctaacaaa |
30006948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 8 - 799
Target Start/End: Complemental strand, 30001645 - 30000861
Alignment:
| Q |
8 |
ggtattgcgtgtaagtgttgagctctatgtatagattgtccaaatttctcatccatgttcaaattagaaggactaatattatatggaagtttccaattaa |
107 |
Q |
| |
|
||||||||||| || || |||||||| |||||| ||||||||||||| ||||| |||||||| |||||||||||||||| |||||||| ||| |||| |
|
|
| T |
30001645 |
ggtattgcgtgcaaatgctgagctcttggtatagtgagtccaaatttctcctccatattcaaattggaaggactaatattatgtggaagttcccagttaa |
30001546 |
T |
|
| Q |
108 |
agcaatgcaccaattgagctatgcctaacctaacagtcctcaaagccaattgaattccagggcaacgcctacgaccaaatccaaatggtatactttcaaa |
207 |
Q |
| |
|
|||||||||| ||||||||||| | ||| |||| || ||| | |||||||||||||||| ||||| ||||||||| | |||||||||||| |||||| |
|
|
| T |
30001545 |
agcaatgcacgaattgagctataaccaacttaaccgtaatcatacccaattgaattccaggacaacgtctacgaccagaaccaaatggtatagattcaaa |
30001446 |
T |
|
| Q |
208 |
ctcttgtccttcataattcaatttcttgttaataaacctctctggacaaaattcttcagcattttctgaccaaacattaggatctctcgctattgtaaat |
307 |
Q |
| |
|
||||||||| |||||||| ||| || | |||||| |||||||| |||||||||||||||||||||||||||||| |||||||||| | |||| || |
|
|
| T |
30001445 |
ctcttgtccgagataattcatttttttctcaataaatctctctgggtaaaattcttcagcattttctgaccaaacatcaggatctctcccaattgcccat |
30001346 |
T |
|
| Q |
308 |
gcatttactataactcgtgtcttttcctttacaaaataaccatcaattgttatgttctctctacattcacgagggagtaagaagggtgaaactggatgaa |
407 |
Q |
| |
|
|||||||||||||||||||||||||| |||| | ||||| |||||||||||||||||||||||||||||||||||| ||| || |||| ||| |||| || |
|
|
| T |
30001345 |
gcatttactataactcgtgtcttttcttttatagaataatcatcaattgttatgttctctctacattcacgagggattaataaaggtgcaacaggataaa |
30001246 |
T |
|
| Q |
408 |
gtcttaaagtttcatcaacaaccatatctaagtaattaaaattcttcaaatccttctcttcaaccattctcttatttcctacttcattttgtatttcatc |
507 |
Q |
| |
|
||||||| ||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30001245 |
gtcttaaggtttcatcaaccaccatatctaggtaattaaaattcttcaaatccttttcttcaaccattctcttatttcctacttcattttgtatttcatc |
30001146 |
T |
|
| Q |
508 |
ttgaagatttttcatcactcttggatgccttaaaagttcggataaagcccactcaattgtggtagcagatgtactaaatgatgccacaaccatgtctagt |
607 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| |||||||||||||| || | | | ||||||| || ||||||| | | |||||| || |
|
|
| T |
30001145 |
ttgaagaattttcatcactcttggatgccttaaaagttcagataaagcccactctatcacgtttgaagatgtatcaattgatgcccctatcatgtcgagc |
30001046 |
T |
|
| Q |
608 |
aaaatagctttgatgttagttcgatcaatgacatgattttgttcactcccatgatcaatgttttggtgcataaaagtgagaagtatgtctacaaagtctt |
707 |
Q |
| |
|
|||||||| |||||| | |||||||||||||| ||| |||| ||| | || ||||||| |||||||||||| | |||| | |||||||||| |||| |
|
|
| T |
30001045 |
aaaatagccttgatgatcgttcgatcaatgacgagatcttgtccaccctcaacatcaatggtttggtgcataattgaaagaactgtgtctacaaaatctt |
30000946 |
T |
|
| Q |
708 |
catgacggagttttgtctgtattagtggtttgttcatgctctgatattatcatctccaacacatcatcaagtgctttgttggttcttttgca |
799 |
Q |
| |
|
| || | |||||||||||| |||||||||||||||| ||||||||||||||| || |||||||| ||||| ||||| ||||||| |
|
|
| T |
30000945 |
tagga-------tcgtctgtattagtagtttgttcatgctctgttattatcatctccaaaacttcatcaagagctttactggtttttttgca |
30000861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 314; E-Value: 1e-176
Query Start/End: Original strand, 8 - 712
Target Start/End: Original strand, 30067754 - 30068459
Alignment:
| Q |
8 |
ggtattgcgtgtaagtgttgagctctatgtatagattgtccaaatttctcatccatgttcaaattagaaggactaatattatatggaagtttccaattaa |
107 |
Q |
| |
|
||||||||||| || || |||||||| |||||| ||||||||||||| ||||| |||||||| | ||||||||||||| || ||||| |||||||| |
|
|
| T |
30067754 |
ggtattgcgtgcaaatgctgagctcttggtatagtgagtccaaatttctcctccatattcaaattgaatggactaatattatgtgaaagttcccaattaa |
30067853 |
T |
|
| Q |
108 |
agcaatgcaccaattgagctatgcctaacctaacagtcctcaaagccaattgaattccagggcaacgcctacgaccaaatccaaatggtatactttcaaa |
207 |
Q |
| |
|
|||||||||| ||||||||||| | ||| ||||||| | ||| |||||||||||||||||||||| ||||||||| | ||||||||| ||||||||| |
|
|
| T |
30067854 |
agcaatgcacaaattgagctataaccaacttaacagtagttaaacccaattgaattccagggcaacgtctacgaccataatcaaatggtaaactttcaaa |
30067953 |
T |
|
| Q |
208 |
ctcttgtccttcataattcaatttcttgttaataaacctctctggacaaaattcttcagcattttctgaccaaacattaggatctctcgctattgtaaat |
307 |
Q |
| |
|
|||||||| || |||||||| |||||| | |||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||| || |
|
|
| T |
30067954 |
ctcttgtctttgataattcattttcttttcaataaatctctttggataaaattcttcagcattttctgaccaaacattaggatctctccctattgcccat |
30068053 |
T |
|
| Q |
308 |
gcatttactataactcgtgtcttttcctttacaaaataaccatcaattgttatgttctctctacattcacgagggagtaagaagggtgaaactggatgaa |
407 |
Q |
| |
|
|||||||| |||| || ||||||||||||| ||||||| ||||||||||||||||||||||||||| | |||||| || ||||||| ||| |||| | |
|
|
| T |
30068054 |
gcatttaccataattctcgtcttttcctttataaaataatcatcaattgttatgttctctctacatttaggagggactagtaagggtgcaacaggataca |
30068153 |
T |
|
| Q |
408 |
gtcttaaagtttcatcaacaaccatatctaagtaattaaaattcttcaaatccttctcttcaaccattctcttatttcctacttcattttgtatttcatc |
507 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
30068154 |
gtcttaaggtttcatcaaccaccatatctaagtaattcaacttcttcaaatccttctcttcaaccattcttttatttcctacttcattttgtatctcatc |
30068253 |
T |
|
| Q |
508 |
ttgaagatttttcatcactcttggatgccttaaaagttcggataaagcccact-caattgtggtagcagatgtactaaatgatgccacaaccatgtctag |
606 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| | ||||||||||| | ||| | ||||||||||||| || || |||||| | |||||| || |
|
|
| T |
30068254 |
ttgaagaattttcatcactcttggatgccttaaaagtgcagataaagcccattaaaatcgaggtagcagatgtatcaattgctgccactatcatgtcgag |
30068353 |
T |
|
| Q |
607 |
taaaatagctttgatgttagttcgatcaatgacatgattttgttcactcccatgatcaatgttttggtgcataaaagtgagaagtatgtctacaaagtct |
706 |
Q |
| |
|
||||||||||||||||||| ||||||||| || |||||||||||| | | ||||||| |||| ||||||| | |||||||||||||| || ||| |
|
|
| T |
30068354 |
caaaatagctttgatgttagatcgatcaattacgagattttgttcaccctcgacatcaatggtttgatgcataattgaaagaagtatgtctacgaaatct |
30068453 |
T |
|
| Q |
707 |
tcatga |
712 |
Q |
| |
|
| |||| |
|
|
| T |
30068454 |
ttatga |
30068459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 20 - 784
Target Start/End: Complemental strand, 29954201 - 29953438
Alignment:
| Q |
20 |
aagtgttgagctctatgtatagattgtccaaatttctcatccatgttcaaattagaaggactaatattatatggaagtttccaattaaagcaatgcacca |
119 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||| ||||| |||||||| |||||||| |||||||||||||||| ||||| ||| |||||||||| |
|
|
| T |
29954201 |
aagtgttgagctcttggtatagtgagtccaaatttctcctccatattcaaattggaaggactgatattatatggaagttcccaatcaaaacaatgcacca |
29954102 |
T |
|
| Q |
120 |
attgagctatgcctaacctaacagtcctcaaagccaattgaattccagggcaacgcctacgaccaaatccaaatggtatactttcaaactcttgtccttc |
219 |
Q |
| |
|
|||| || || | ||| |||| ||| ||| || ||||||||||||| ||||| || || ||| | |||||||||| | ||||||||||||||||| |
|
|
| T |
29954101 |
attgggcaataaccaacttaacggtcactaaacccgattgaattccaggacaacgtctgcggccagaaccaaatggtagagattcaaactcttgtccttg |
29954002 |
T |
|
| Q |
220 |
ataattcaatttcttgttaataaacctctctggacaaaattcttcagcattttctgaccaaacattaggatctctcgctattgtaaatgcatttactata |
319 |
Q |
| |
|
|||||||| ||||||| ||| || |||||||| |||||||||| |||||||||||||||||||| | ||||||| |||| | |||||||||||||| |
|
|
| T |
29954001 |
ataattcattttcttgccaatgaatctctctgggtaaaattcttcggcattttctgaccaaacatttgaatctctccctatagcccatgcatttactata |
29953902 |
T |
|
| Q |
320 |
actcgtgtcttttcctttacaaaataaccatcaattgttatgttctctctacattcacgagggagtaagaagggtgaaactggatgaagtcttaaagttt |
419 |
Q |
| |
|
||||| ||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||| ||||||| ||| || | |||||||||||||| |
|
|
| T |
29953901 |
actcgagtcttttcctttataaaatatccatcaattgttacactctctctacattcacgagggagtaataagggtgcaacagggtaaagtcttaaagttt |
29953802 |
T |
|
| Q |
420 |
catcaacaaccatatctaagtaattaaaattcttcaaatccttctcttcaaccattctcttatttcctacttcattttgtatttcatcttgaagattttt |
519 |
Q |
| |
|
||| ||| ||||| ||||||||| | || |||| ||||| |||||||||| |||||| | ||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
29953801 |
catgaaccaccatctctaagtaacttaagttctctaaatctttctcttcaatcattctttcatttcctacttcattttgtatctcatcttgaaggatttt |
29953702 |
T |
|
| Q |
520 |
catcactcttggatgccttaaaagttcggataaagcccactcaattgtggtagcagatgtactaaatgatgccacaaccatgtctagtaaaatagctttg |
619 |
Q |
| |
|
||| || |||||||| |||| |||||||||||||||||| ||||| ||||||||||||| || || ||||||| || |||||||||||| || ||| |
|
|
| T |
29953701 |
cattacccttggatgtcttagaagttcggataaagcccattcaatcacggtagcagatgtatcaattgctgccacagtcaagtctagtaaaattgccttg |
29953602 |
T |
|
| Q |
620 |
atgttagttcgatcaatgacatgattttgttcactcccatgatcaatgttttggtgcataaaagtgagaagtatgtctacaaagtcttcatgacggagtt |
719 |
Q |
| |
|
||||||||||||||||||| |||||||| |||| | | |||||||| ||||||||||||| || ||||||||||| |||||||||||||| | || || |
|
|
| T |
29953601 |
atgttagttcgatcaatgaaatgattttcttcattttctagatcaatggtttggtgcataaatgtaagaagtatgtcaacaaagtcttcatggc-gattt |
29953503 |
T |
|
| Q |
720 |
ttgtctgtattagtggtttgttcatgctctgatattatcatctccaacacatcatcaagtgcttt |
784 |
Q |
| |
|
|||||| ||||||||||||||||||||||| || || | |||||||| ||||||| |||||| |
|
|
| T |
29953502 |
ttgtctacattagtggtttgttcatgctctgttaaaataacttccaacacctcatcaattgcttt |
29953438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 8 - 707
Target Start/End: Original strand, 30043237 - 30043936
Alignment:
| Q |
8 |
ggtattgcgtgtaagtgttgagctctatgtatagattgtccaaatttctcatccatgttcaaattagaaggactaatattatatggaagtttccaattaa |
107 |
Q |
| |
|
||||||||||| || || |||||||| |||||| ||||||||||||| ||||| |||||||| || ||||||||||||| |||||||| ||| |||| |
|
|
| T |
30043237 |
ggtattgcgtgcaaatgctgagctcttggtatagtgagtccaaatttctcctccatattcaaattggagggactaatattatgtggaagttcccagttaa |
30043336 |
T |
|
| Q |
108 |
agcaatgcaccaattgagctatgcctaacctaacagtcctcaaagccaattgaattccagggcaacgcctacgaccaaatccaaatggtatactttcaaa |
207 |
Q |
| |
|
| ||||| | ||||||||||| | || ||||||| | ||| |||||||||||||||| ||||||||||||||| | |||||||||||| |||||| |
|
|
| T |
30043337 |
aacaatggataaattgagctataaccaatttaacagtaattaaacccaattgaattccaggacaacgcctacgaccagaaccaaatggtatagattcaaa |
30043436 |
T |
|
| Q |
208 |
ctcttgtccttcataattcaatttcttgttaataaacctctctggacaaaattcttcagcattttctgaccaaacattaggatctctcgctattgtaaat |
307 |
Q |
| |
|
||||||||| |||||||| ||| || | | ||| |||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||| || |
|
|
| T |
30043437 |
ctcttgtccaagataattcatttttttctctacaaatctctctgggtaaaattctttagcattttctgaccaaacattaggatctctccctattgcccat |
30043536 |
T |
|
| Q |
308 |
gcatttactataactcgtgtcttttcctttacaaaataaccatcaattgttatgttctctctacattcacgagggagtaagaagggtgaaactggatgaa |
407 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||||||||||||||| || |||||||| |||||||||||| || || |||| || || | || |
|
|
| T |
30043537 |
gcatttactataagtcgtgtcttttcctttataaaataaccatcaattgttgtgctctctctagattcacgagggactagtaacggtgctacggggtaaa |
30043636 |
T |
|
| Q |
408 |
gtcttaaagtttcatcaacaaccatatctaagtaattaaaattcttcaaatccttctcttcaaccattctcttatttcctacttcattttgtatttcatc |
507 |
Q |
| |
|
||||||| || |||||||| ||||||||||| ||||| || ||||| | ||||||||| | ||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
30043637 |
gtcttaaggtctcatcaaccaccatatctaaataattcaacttctttagatccttctcgttaaccattcttttatttcctacttcattttgtatctcatc |
30043736 |
T |
|
| Q |
508 |
ttgaagatttttcatcactcttggatgccttaaaagttcggataaagcccactcaattgtggtagcagatgtactaaatgatgccacaaccatgtctagt |
607 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||||| ||||||||||| ||||| | ||||||||||||| || || |||||| | |||||| || |
|
|
| T |
30043737 |
ttgaagctttttcatcactcttggatgtcttaaaagttcagataaagcccattcaatcgaggtagcagatgtatcaattgctgccactatcatgtcgagc |
30043836 |
T |
|
| Q |
608 |
aaaatagctttgatgttagttcgatcaatgacatgattttgttcactcccatgatcaatgttttggtgcataaaagtgagaagtatgtctacaaagtctt |
707 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||||||||| | || ||||||| |||||||||||| | ||||||||||||||||| |||| |
|
|
| T |
30043837 |
aaaatagccttgatgttagttcgatcaatgacgagattttgttcaccctcaatatcaatggtttggtgcataattgaaagaagtatgtctacaaaatctt |
30043936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 8 - 821
Target Start/End: Complemental strand, 29947253 - 29946441
Alignment:
| Q |
8 |
ggtattgcgtgtaagtgttgagctctatgtatagattg-tccaaatttctcatccatgttcaaattagaaggactaatattatatggaagtttccaatta |
106 |
Q |
| |
|
||||||||||| ||||||||||| || | ||||| || || ||||||||| ||||| |||||||| ||||||||||||||| ||||||||| ||||||| |
|
|
| T |
29947253 |
ggtattgcgtgcaagtgttgagcccttggaatagagtgatctaaatttctcctccatattcaaattggaaggactaatattacatggaagttcccaatta |
29947154 |
T |
|
| Q |
107 |
aagcaatgcaccaattgagctatgcctaacctaacagtcctcaaagccaattgaattccagggcaacgcctacgaccaaatccaaatggtatactttcaa |
206 |
Q |
| |
|
|||||||| |||||||||||||| | | ||| || ||||| ||| || ||||||||| ||||| ||||||||| | |||||||||||| || || |
|
|
| T |
29947153 |
aagcaatgtaccaattgagctataaccattttaattgtgatcaaacccatttcaattccaggacaacgtctacgaccagaaccaaatggtatagatttaa |
29947054 |
T |
|
| Q |
207 |
actcttgtccttcataattcaatttcttgttaataaacctctctggacaaaattcttcagcattttctgaccaaacattaggatctctcgctattgtaaa |
306 |
Q |
| |
|
||| |||||||||||||||| |||| ||| |||||| || |||||| |||||||||| |||||||||||||||| ||| ||||||| |||| | | |
|
|
| T |
29947053 |
acttatgtccttcataattcattttcatgtcaataaatctttctggatgaaattcttcataattttctgaccaaacactagaatctctctctatagccca |
29946954 |
T |
|
| Q |
307 |
tgcatttactataactcgtgtcttttcctttacaaaataaccatcaattgttatgttctctctacattcacgagggagtaagaagggtgaaactggatga |
406 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||| |||||||||||||| ||||||||||||||||||||||||| ||||||| ||| || | | |
|
|
| T |
29946953 |
tgcatttactataactcgtgtcttttccattataaaatatccatcaattgttatactctctctacattcacgagggagtaacaagggtgcaacagggtaa |
29946854 |
T |
|
| Q |
407 |
agtcttaaagtttcatcaacaaccatatctaagtaattaaaattcttcaaatccttctcttcaaccattctcttatttcctacttcattttgtatttcat |
506 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||| | || |||| ||||| |||||||| |||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
29946853 |
agtcttaaagtttcatgaaccaccatatctaagtaacttaacttctctaaatctttctcttcgaccattcttttatttcctacttcattttgtatatcat |
29946754 |
T |
|
| Q |
507 |
cttgaagatttttcatcactcttggatgccttaaaagttcggat-aaagcccactcaattgtggtagcagatgtactaaatgatgccacaaccatgtcta |
605 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||||| ||| |||||||| ||||| | |||||||||||| || || ||||| |||| |||||| |
|
|
| T |
29946753 |
cttgaagggttttcatcactcttggattccttaaaagttcagataaaagcccattcaatcgcggtagcagatgtttcaattgctgccataaccgtgtcta |
29946654 |
T |
|
| Q |
606 |
gtaaaatagctttgatgttagttcgatcaatgacatgattttgttcactcccatgatcaatgttttggtgcataaaagtgagaagtatgtctacaaagtc |
705 |
Q |
| |
|
|||| || || || ||||| | ||||||||| ||||| || |||||| || ||||| ||| |||||| | ||| | ||| ||||||||||| ||||| |
|
|
| T |
29946653 |
gtaatat-gccttaatgtttggtcgatcaataacatgtttctgttcattcttttgatctatggtttggttcttaattgagagtagtatgtctacgaagtc |
29946555 |
T |
|
| Q |
706 |
ttcatgacggagttttgtctgtattagtggtttgttcatgctctgatattatcatctccaacacatcatcaagtgctttgttggttcttttgcaggctcg |
805 |
Q |
| |
|
||||||| ||||||||||| |||||| |||||||||||||||| |||||||| |||| ||| |||||||||| ||| | ||| | ||||||||||| |
|
|
| T |
29946554 |
ttcatga-tgagttttgtctacattagttgtttgttcatgctctgttattatcacttccagcacctcatcaagtgatttacttgttttcttgcaggctcg |
29946456 |
T |
|
| Q |
806 |
tggttaagccctaaca |
821 |
Q |
| |
|
| ||||| |||||||| |
|
|
| T |
29946455 |
t-gttaatccctaaca |
29946441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 8 - 712
Target Start/End: Complemental strand, 29995971 - 29995268
Alignment:
| Q |
8 |
ggtattgcgtgtaagtgttgagctctatgtatagattgtccaaatttctcatccatgttcaaattagaaggactaatattatatggaagtttccaattaa |
107 |
Q |
| |
|
|||||||| || || ||||||| ||| |||||| |||||||||| || ||||| |||||| |||||| ||||||||||| |||||||| |||||||| |
|
|
| T |
29995971 |
ggtattgcatgcaaatgttgagttcttggtatagtgagtccaaatttttcctccatattcaaactagaagaactaatattatgtggaagttcccaattaa |
29995872 |
T |
|
| Q |
108 |
agcaatgcaccaattgagctatgcctaacctaacagtcctcaaagccaattgaattccagggcaacgcctacgaccaaatccaaatggtatactttcaaa |
207 |
Q |
| |
|
|||||||||| ||||||||||| | ||| ||| || | ||| |||||||||||||||| ||||||||||||| | | |||||||||||| |||||| |
|
|
| T |
29995871 |
agcaatgcacaaattgagctataaccaacttaatcgtaattaaacccaattgaattccaggacaacgcctacgactagaaccaaatggtatagattcaaa |
29995772 |
T |
|
| Q |
208 |
ctcttgtccttcataattcaatttcttgttaataaacctctctggacaaaattcttcagcattttctgaccaaacattaggatctctcgctattgtaaat |
307 |
Q |
| |
|
||||||||| |||||||| ||| || | |||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||| || |
|
|
| T |
29995771 |
ctcttgtccgagataattcagttt-ttctcaataaatctctctggataaaattcttcggcattttctgaccaaacattaggatctctccctattgcccat |
29995673 |
T |
|
| Q |
308 |
gcatttactataactcgtgtcttttcctttacaaaataaccatcaattgttatgttctctctacattcacgagggagtaagaagggtgaaactggatgaa |
407 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||||||||||||| || || |||||||| | |||||||||| || || |||| ||| || | || |
|
|
| T |
29995672 |
gcatttactataagtcgtgtcttttcctttataaaataaccatcaattattgtgctctctctagactcacgagggactagtaatggtgcaacagggtaaa |
29995573 |
T |
|
| Q |
408 |
gtcttaaagtttcatcaacaaccatatctaagtaattaaaattcttcaaatccttctcttcaaccattctcttatttcctacttcattttgtatttcatc |
507 |
Q |
| |
|
||||||| || |||||||| ||||||||||| ||||| || ||||||| ||| ||||| |||| | |||| ||||||||||||||||||||||| ||||| |
|
|
| T |
29995572 |
gtcttaaggtctcatcaaccaccatatctaaataattcaacttcttcatatctttctcctcaatctttcttttatttcctacttcattttgtatctcatc |
29995473 |
T |
|
| Q |
508 |
ttgaagatttttcatcactcttggatgccttaaaagttcggataaagcccactcaattgtggtagcagatgtactaaatgatgccacaaccatgtctagt |
607 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||||| ||||||||||| ||||| | ||||||||||||| | || |||||| | |||||| || |
|
|
| T |
29995472 |
ttgaagctttttcatcactcttggatgtcttaaaagttcagataaagcccattcaatcgaggtagcagatgtatcgattgctgccactatcatgtcgagc |
29995373 |
T |
|
| Q |
608 |
aaaatagctttgatgttagttcgatcaatgacatgattttgttcactcccatgatcaatgttttggtgcataaaagtgagaagtatgtctacaaagtctt |
707 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||||||||| | | ||||||| |||||||||||| | ||||||||||||||||| |||| |
|
|
| T |
29995372 |
aaaatagccttgatgttagttcgatcaatgacgagattttgttcaccctcgacatcaatggtttggtgcataattgaaagaagtatgtctacaaaatctt |
29995273 |
T |
|
| Q |
708 |
catga |
712 |
Q |
| |
|
|||| |
|
|
| T |
29995272 |
tatga |
29995268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 8 - 784
Target Start/End: Complemental strand, 29965481 - 29964706
Alignment:
| Q |
8 |
ggtattgcgtgtaagtgttgagctctatgtatagattgtccaaatttctcatccatgttcaaattagaaggactaatattatatggaagtttccaattaa |
107 |
Q |
| |
|
||||||||||| || |||||||| || |||||| |||||||||||| ||||| |||||||| ||||| |||||||||| |||||||| |||||||| |
|
|
| T |
29965481 |
ggtattgcgtgcaaatgttgagcccttggtatagtgactccaaatttctcttccatattcaaattggaagggctaatattatgtggaagttcccaattaa |
29965382 |
T |
|
| Q |
108 |
agcaatgcaccaattgagctatgcctaacctaacagtcctcaaagccaattgaattccagggcaacgcctacgaccaaatccaaatggtatactttcaaa |
207 |
Q |
| |
|
||||||||||||||||||||| | || ||||| || |||| |||||||||| ||||| ||||| |||||||| | |||||||||||| |||||| |
|
|
| T |
29965381 |
agcaatgcaccaattgagctacaacaaatctaaccgtaaccaaacccaattgaatcccaggacaacgtctacgacctgaaccaaatggtatagattcaaa |
29965282 |
T |
|
| Q |
208 |
ctcttgtccttcataattcaatttcttgttaataaacctctctggacaaaattcttcagcattttctgaccaaacattaggatctctcgctattgtaaat |
307 |
Q |
| |
|
| ||||||| |||||||| |||||| | | |||| ||||||||| |||| || ||||| |||||| |||||| ||| | ||||||| |||| | || |
|
|
| T |
29965281 |
ttgctgtccttgataattcattttcttatcactaaatctctctggataaaactcatcagcgttttctaaccaaatatttgaatctctccctatagcccat |
29965182 |
T |
|
| Q |
308 |
gcatttactataactcgtgtcttttcctttacaaaataaccatcaattgttatgttctctctacattcacgagggagtaagaagggtgaaactggatgaa |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| ||||||||||||||| | ||||||||||||||||| ||||| |||||| ||| || | || |
|
|
| T |
29965181 |
gcatttactataactcgtgtcttttcctttataaaatatccatcaattgttatgctttctctacattcacgaggaagtaataagggtccaacagggtaaa |
29965082 |
T |
|
| Q |
408 |
gtcttaaagtttcatcaacaaccatatctaagtaattaaaattcttcaaatccttctcttcaaccattctcttatttcctacttcattttgtatttcatc |
507 |
Q |
| |
|
||||||| || |||||||| ||||||||||||||||| || ||||||||||| |||||||| |||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
29965081 |
gtcttaatgtctcatcaaccaccatatctaagtaattcaacttcttcaaatcattctcttcgaccattcttttatttcctacttcattttgtatctcatc |
29964982 |
T |
|
| Q |
508 |
ttgaagatttttcatcactcttggatgccttaaaagttcggataaagcccactcaattgtggtagcagatgtactaaatgatgccacaaccatgtctagt |
607 |
Q |
| |
|
|||||| |||||||||||||||||||| || |||||||| ||||||||||||||||| ||||||| | |||| || | |||||||| |||||||||| |
|
|
| T |
29964981 |
ttgaagctttttcatcactcttggatgtctgaaaagttcagataaagcccactcaatcgtggtagtggctgtatcaattcctgccacaatcatgtctagt |
29964882 |
T |
|
| Q |
608 |
aaaatagctttgatgttagttcgatcaatgacatgattttgttcactcccatgatcaatgttttggtgcataaaagtgagaagtatgtctacaaagtctt |
707 |
Q |
| |
|
||||| || ||||||||||||| ||||| ||| | |||||||| | | |||| | ||||||||| || | ||||||||| || | || |||| |
|
|
| T |
29964881 |
aaaattgccttgatgttagttctgtcaataacaccactttgttcattttctggatctaccgtttggtgcacaattgagagaagtatatcaatgaaatctt |
29964782 |
T |
|
| Q |
708 |
catgacggagttttgtctgtattagtggtttgttcatgctctgatattatcatctccaacacatcatcaagtgcttt |
784 |
Q |
| |
|
|||||| || ||||||| ||||||| ||||||||||||||| |||||||||||||| || |||||||||||||| |
|
|
| T |
29964781 |
catgac-gaactttgtctacattagtgctttgttcatgctctgtaattatcatctccaatacctcatcaagtgcttt |
29964706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 8 - 784
Target Start/End: Original strand, 30009317 - 30010092
Alignment:
| Q |
8 |
ggtattgcgtgtaagtgttgagctctatgtatagattgtccaaatttctcatccatgttcaaattagaaggactaatattatatggaagtttccaattaa |
107 |
Q |
| |
|
||||||||||| || |||||||| || |||||| |||||||||||| ||||| |||||||| ||||| |||||||||| |||||||| |||||||| |
|
|
| T |
30009317 |
ggtattgcgtgcaaatgttgagcccttggtatagtgactccaaatttctcttccatattcaaattggaagggctaatattatgtggaagttcccaattaa |
30009416 |
T |
|
| Q |
108 |
agcaatgcaccaattgagctatgcctaacctaacagtcctcaaagccaattgaattccagggcaacgcctacgaccaaatccaaatggtatactttcaaa |
207 |
Q |
| |
|
||||||||||||||||||||| | || ||||| || |||| |||||||||| ||||| ||||| |||||||| | |||||||||||| |||||| |
|
|
| T |
30009417 |
agcaatgcaccaattgagctacaacaaatctaaccgtaaccaaacccaattgaatcccaggacaacgtctacgacctgaaccaaatggtatagattcaaa |
30009516 |
T |
|
| Q |
208 |
ctcttgtccttcataattcaatttcttgttaataaacctctctggacaaaattcttcagcattttctgaccaaacattaggatctctcgctattgtaaat |
307 |
Q |
| |
|
| ||||||| |||||||| |||||| | | |||| ||||||||| |||| || ||||| |||||| |||||| ||| | ||||||| |||| | || |
|
|
| T |
30009517 |
ttgctgtccttgataattcattttcttatcactaaatctctctggataaaactcatcagcgttttctaaccaaatatttgaatctctccctatagcccat |
30009616 |
T |
|
| Q |
308 |
gcatttactataactcgtgtcttttcctttacaaaataaccatcaattgttatgttctctctacattcacgagggagtaagaagggtgaaactggatgaa |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| ||||||||||||||| | ||||||||||||||||| ||||| |||||| ||| || | || |
|
|
| T |
30009617 |
gcatttactataactcgtgtcttttcctttataaaatatccatcaattgttatgctttctctacattcacgaggaagtaataagggtccaacagggtaaa |
30009716 |
T |
|
| Q |
408 |
gtcttaaagtttcatcaacaaccatatctaagtaattaaaattcttcaaatccttctcttcaaccattctcttatttcctacttcattttgtatttcatc |
507 |
Q |
| |
|
||||||| || |||||||| ||||||||||||||||| || ||||||||||| |||||||| |||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
30009717 |
gtcttaatgtctcatcaaccaccatatctaagtaattcaacttcttcaaatcattctcttcgaccattcttttatttcctacttcattttgtatctcatc |
30009816 |
T |
|
| Q |
508 |
ttgaagatttttcatcactcttggatgccttaaaagttcggataaagcccactcaattgtggtagcagatgtactaaatgatgccacaaccatgtctagt |
607 |
Q |
| |
|
|||||| |||||||||||||||||||| || |||||||| ||||||||||||||||| ||||||| | |||| || | |||||||| |||||||||| |
|
|
| T |
30009817 |
ttgaagctttttcatcactcttggatgtctgaaaagttcagataaagcccactcaatcgtggtagtggctgtatcaattcctgccacaatcatgtctagt |
30009916 |
T |
|
| Q |
608 |
aaaatagctttgatgttagttcgatcaatgacatgattttgttcactcccatgatcaatgttttggtgcataaaagtgagaagtatgtctacaaagtctt |
707 |
Q |
| |
|
||||| || ||||||||||||| ||||| ||| | |||||||| | | |||| | ||||||||| || | ||||||||| || | || |||| |
|
|
| T |
30009917 |
aaaattgccttgatgttagttctgtcaataacaccactttgttcattttctggatctaccgtttggtgcacaattgagagaagtatatcaatgaaatctt |
30010016 |
T |
|
| Q |
708 |
catgacggagttttgtctgtattagtggtttgttcatgctctgatattatcatctccaacacatcatcaagtgcttt |
784 |
Q |
| |
|
|||||| || ||||||| ||||||| ||||||||||||||| |||||||||||||| || |||||||||||||| |
|
|
| T |
30010017 |
catgac-gaactttgtctacattagtgctttgttcatgctctgtaattatcatctccaatacctcatcaagtgcttt |
30010092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 512 - 561
Target Start/End: Complemental strand, 43802303 - 43802254
Alignment:
| Q |
512 |
agatttttcatcactcttggatgccttaaaagttcggataaagcccactc |
561 |
Q |
| |
|
|||||||||||||||||||||||||| | || || |||||||||||||| |
|
|
| T |
43802303 |
agatttttcatcactcttggatgcctcatgagctctgataaagcccactc |
43802254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 512 - 561
Target Start/End: Complemental strand, 43812872 - 43812823
Alignment:
| Q |
512 |
agatttttcatcactcttggatgccttaaaagttcggataaagcccactc |
561 |
Q |
| |
|
||||||||||| |||||||||||||| | || ||||||||||||||||| |
|
|
| T |
43812872 |
agatttttcattactcttggatgcctcatgagctcggataaagcccactc |
43812823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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