View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3704-Insertion-4 (Length: 894)
Name: NF3704-Insertion-4
Description: NF3704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3704-Insertion-4 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 839; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 839; E-Value: 0
Query Start/End: Original strand, 8 - 894
Target Start/End: Original strand, 5605869 - 5606755
Alignment:
| Q |
8 |
tattgttcccgatgtgtttacttataacacatatttggacactttgtgtaaggcaggccaaattgatttggctagaagggtattcgaagagatgtcgtca |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
5605869 |
tattgttcccgatgtgtttacttataacacatatttggacaccttgtgtaaggcaggccaaattgatttggctagaagggtatttgaagagatgtcgtcg |
5605968 |
T |
|
| Q |
108 |
aagagagtttggccaaatgtggtgacttacagtgcaatgatggatggctatgccaaggccaacctcttggaagacgccctaaacctgtatgaagaaatga |
207 |
Q |
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| T |
5605969 |
aagagagtttggccaaatgtggtgacttacagtgcaatgatggatggctatgccaaggccaacctcttggaagacgccctaaacctgtatgaagaaatga |
5606068 |
T |
|
| Q |
208 |
agctccgatctgtttgtcttgatagagtgtcctataacacactcatcggaatctacgagaagctcggcaatcttgatgaagctattgagaagtgcaaaga |
307 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5606069 |
agctccgatctgtttgtcttgatagagtgtcctataacacactcgtcggaatctacgagaagctcggcaatcttgatgaagctattgagaagtgcaaaga |
5606168 |
T |
|
| Q |
308 |
gatggagagaagcggaatcaatagagatgtagtaacctacaatgctcttttgtccgggtatggcaagcatggcatgtatgatgaagttagaagactattt |
407 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5606169 |
gatggagagaagcggaatcaatagagatgtagtaacctacaatgctcttttgtccgggtatggcaagcatggcatgtatgatgaagttagaagactattt |
5606268 |
T |
|
| Q |
408 |
gaggagatgaaggctcggaatatatatccaaatacgctaacttactctacaatgatcgatatgtacactaaaggtgaaatgtttcaggaagcgatggatg |
507 |
Q |
| |
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| T |
5606269 |
gaggagatgaaggctcggaatatatatccaaatacgctaacttactctacaatgatcgatatgtacactaaaggtgaaatgtttcaggaagcgatggatg |
5606368 |
T |
|
| Q |
508 |
tttatagagagttcaagatggcaagattggagattgatgtcgtcttttatagtgcaatcatagatacactatgcaaaaacggtttaatggagtcttctat |
607 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5606369 |
tttatagagagttcaagatggcaagattggagattgacgtcgtcttttatagtgcaatcatagatacactatgcaaaaacggtttaatggagtcttctat |
5606468 |
T |
|
| Q |
608 |
tatgttgcttatagcaatgatggagaaaggaataaagccaaatgtggtcactttcaactccataattgatgcatctcaacaatcaccaactttggagtat |
707 |
Q |
| |
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| T |
5606469 |
tatgttgcttatggcaatgatggagaaaggaataaagccaaatgtggtcactttcaactccataattgatgcatctcaacaatcgccaactttggagtat |
5606568 |
T |
|
| Q |
708 |
ggaattaatggatcttctgatgccattgactatccgattgaacaatcgtctcctattgttattgatggtgcttttcagaatcagccgggggaggaccgta |
807 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |
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| T |
5606569 |
ggagttaatggatcttctgatgccattgactatccgattgaacaatcgtctcctattgttattgatggtgcttttcagaataagccgggggaggaccgga |
5606668 |
T |
|
| Q |
808 |
ttttgaagatgttcgagcaacttgctgctgaaaaggctggtcatttaaagaaggatagaagtggacgacaagacaaacactgcatat |
894 |
Q |
| |
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| T |
5606669 |
ttttgaagatgttcgagcaacttgctgctgaaaaagctggtcatttaaagaagaatagaagtggacgacaagacaaacactgcatat |
5606755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 8 - 894
Target Start/End: Complemental strand, 5595043 - 5594157
Alignment:
| Q |
8 |
tattgttcccgatgtgtttacttataacacatatttggacactttgtgtaaggcaggccaaattgatttggctagaagggtattcgaagagatgtcgtca |
107 |
Q |
| |
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|||||||| ||||| |||||||||||||| ||||||||||| |||||||||| |||||||| ||||||||||| ||||| || ||||| ||||| || |
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| T |
5595043 |
tattgttcgcgatgcctttacttataacacttatttggacacattgtgtaagggcggccaaatagatttggctaggagggtcttggaagaaatgtcttcc |
5594944 |
T |
|
| Q |
108 |
aagagagtttggccaaatgtggtgacttacagtgcaatgatggatggctatgccaaggccaacctcttggaagacgccctaaacctgtatgaagaaatga |
207 |
Q |
| |
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| |||||||||||||| ||| |||||||| || ||||||| ||||| | ||||||||| |||||||||||||| |||||||| |||| |||||||||| |
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| T |
5594943 |
aggagagtttggccaactgttgtgacttatagcacaatgatagatggttgtgccaaggctaacctcttggaagatgccctaaatttgtacgaagaaatga |
5594844 |
T |
|
| Q |
208 |
agctccgatctgtttgtcttgatagagtgtcctataacacactcatcggaatctacgagaagctcggcaatcttgatgaagctattgagaagtgcaaaga |
307 |
Q |
| |
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|||| |||||| ||| | ||||||||||||||||||||||| | |||||||||| | ||||||||| | |||||||||| |||| | |||||||| |
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| T |
5594843 |
agcttcgatctatttctgttgatagagtgtcctataacacaatggtcggaatctatgcgaagctcggtaggtttgatgaagccattggtcaatgcaaaga |
5594744 |
T |
|
| Q |
308 |
gatggagagaagcggaatcaatagagatgtagtaacctacaatgctcttttgtccgggtatggcaagcatggcatgtatgatgaagttagaagactattt |
407 |
Q |
| |
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||||||||| | ||||| || |||||||| ||||| || ||||| ||||||||||| || |||| | |||||||||||||||||||||||||||||||| |
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| T |
5594743 |
gatggagagttgtggaatgaaaagagatgttgtaacttataatgcacttttgtccggatacggcaggtatggcatgtatgatgaagttagaagactattt |
5594644 |
T |
|
| Q |
408 |
gaggagatgaaggctcggaatatatatccaaatacgctaacttactctacaatgatcgatatgtacactaaaggtgaaatgtttcaggaagcgatggatg |
507 |
Q |
| |
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|| |||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||| | ||||||||||| | ||||||||||||||| ||||||| |
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| T |
5594643 |
gaagagatgaaggcttggaacatatatccaaatacgctaacttactctacaatgattgatgtttacactaaaggaggaatgtttcaggaagcaatggatg |
5594544 |
T |
|
| Q |
508 |
tttatagagagttcaagatggcaagattggagattgatgtcgtcttttatagtgcaatcatagatacactatgcaaaaacggtttaatggagtcttctat |
607 |
Q |
| |
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|||||| ||| ||||||| |||| ||||||| ||||||| |||||||||| | |||| |||||| ||||||||||||| |||||| ||||||||||||| |
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|
| T |
5594543 |
tttataaagatttcaagaaggcacaattggaggttgatgttgtcttttatacttcaattatagattcactatgcaaaaatggtttagtggagtcttctat |
5594444 |
T |
|
| Q |
608 |
tatgttgcttatagcaatgatggagaaaggaataaagccaaatgtggtcactttcaactccataattgatgcatctcaacaatcaccaactttggagtat |
707 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||| || |||||| |||||| |||| ||| |
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| T |
5594443 |
tatgttgcttattgcaatgatagagaaaggaatcaagccaaatgttgtcactttcaactccataattgatgcctccagacaatcgccaactctggaatat |
5594344 |
T |
|
| Q |
708 |
ggaattaatggatcttctgatgccattgactatccgattgaacaatcgtctcctattgttattgatggtgcttttcagaatcagccgggggaggaccgta |
807 |
Q |
| |
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|| || |||| ||||| | ||| |||| ||||| | |||||||| |||| |||| |||| |||||||||||||||||| || | ||||| ||||| | |
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| T |
5594343 |
ggggttcatggttcttcacaagccgttgagtatccaactgaacaattgtcttctatgcttatcgatggtgcttttcagaataagacaggggatgaccgga |
5594244 |
T |
|
| Q |
808 |
ttttgaagatgttcgagcaacttgctgctgaaaaggctggtcatttaaagaaggatagaagtggacgacaagacaaacactgcatat |
894 |
Q |
| |
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| ||||| ||||||||||| |||||||||||||| ||||||||| | |||||||||| | |||||||||||| |||||||||||| |
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|
| T |
5594243 |
tcttgaaaatgttcgagcagcttgctgctgaaaaagctggtcatagagagaaggataggaagggacgacaagaccaacactgcatat |
5594157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 1e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 607 - 841
Target Start/End: Original strand, 6623864 - 6624092
Alignment:
| Q |
607 |
ttatgttgcttatagcaatgatggagaaaggaataaagccaaatgtggtcactttcaactccataattgatgcatctcaacaatcaccaactttggagta |
706 |
Q |
| |
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||||||| ||||| |||||||| | |||| |||| ||||||||| |||| ||||||||||||| ||||||||||| | | |||||||||| || |
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|
| T |
6623864 |
ttatgttccttattgcaatgatagggaaacgaatcaagccaaatttggtgactttcaactccaaaattgatgcattccggc------caactttggaata |
6623957 |
T |
|
| Q |
707 |
tggaattaatggatcttctgatgccattgactatccgattgaacaatcgtctcctattgttattgatggtgcttttcagaatcagccgggggaggaccgt |
806 |
Q |
| |
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|||| || || | ||||| | ||||||| ||| ||| ||||||||| ||| |||| |||| |||| ||||||| ||||| || | ||||| ||||| |
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| T |
6623958 |
tggagttcattgttcttcgcaatccattgagtatacgagtgaacaatcttcttctatgcttatcgatgatgctttttagaataaggccggggatgaccgg |
6624057 |
T |
|
| Q |
807 |
attttgaagatgttcgagcaacttgctgctgaaaa |
841 |
Q |
| |
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|| ||||||||||||||||||| |||||||||||| |
|
|
| T |
6624058 |
atcttgaagatgttcgagcaacatgctgctgaaaa |
6624092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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