View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3704-Insertion-8 (Length: 344)

Name: NF3704-Insertion-8
Description: NF3704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3704-Insertion-8
NF3704-Insertion-8
[»] chr3 (5 HSPs)
chr3 (27-344)||(34819828-34820145)
chr3 (274-338)||(28958522-28958586)
chr3 (281-338)||(21758366-21758423)
chr3 (294-343)||(50303066-50303115)
chr3 (290-338)||(55406849-55406897)
[»] chr1 (6 HSPs)
chr1 (281-338)||(14149567-14149624)
chr1 (281-338)||(21008146-21008203)
chr1 (288-338)||(1607326-1607376)
chr1 (281-343)||(36438335-36438397)
chr1 (293-343)||(47950082-47950132)
chr1 (282-338)||(47449137-47449193)
[»] chr7 (3 HSPs)
chr7 (281-338)||(36783191-36783250)
chr7 (304-338)||(2457897-2457931)
chr7 (274-335)||(23031686-23031746)
[»] chr2 (6 HSPs)
chr2 (282-338)||(33440792-33440848)
chr2 (281-343)||(43592653-43592715)
chr2 (306-338)||(44722605-44722637)
chr2 (87-138)||(35567090-35567141)
chr2 (281-336)||(35813889-35813944)
chr2 (304-338)||(32839060-32839094)
[»] chr8 (1 HSPs)
chr8 (281-337)||(12892559-12892615)
[»] chr6 (2 HSPs)
chr6 (304-344)||(7753630-7753670)
chr6 (306-338)||(32604487-32604519)
[»] chr4 (1 HSPs)
chr4 (287-335)||(29431779-29431827)


Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 27 - 344
Target Start/End: Complemental strand, 34820145 - 34819828
Alignment:
Q  27 gggatattagtgatgaagatgtaaattacacggtagtcggtagataaagactacattgtattgtattgaagttttgctgtaatggaataaatcaaagttg 126  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||     
T  34820145 gggatattagcgatgaagatgtaaattatacggtagtcggtagataaagattacattgtattgtattgaagttttgttgtaatggaataaatcaaagtta 34820046  T
Q  127 ttaagaaagaaatcatcaacattttaggccaataaagttagtttagaggggttgtaagtgnnnnnnnaaaactagtgggtatgtttgttatttaaagaaa 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||       |||||||| ||||||||||||||||||||||||    
T  34820045 ttaagaaagaaatcatcaacattttaggccaataaagttagtttagaggggatgtaagtgtttttttaaaactagggggtatgtttgttatttaaagaaa 34819946  T
Q  227 cctaaggggatgtgaatgtagtttatccttagactgatcgaacaatgaaaaaatggtctttttaatttgtgcccttggggcacaaaataagaaactaaat 326  Q
    |||||||||||||||||| |||||||||||| | ||||||||||||||||||| ||||||||||| |||||||||  |||||||| |||| |||||||||    
T  34819945 cctaaggggatgtgaatgcagtttatccttaaattgatcgaacaatgaaaaaagggtctttttaacttgtgccctaagggcacaagataaaaaactaaat 34819846  T
Q  327 aaagaaatttaatcttga 344  Q
    |||||||||| |||||||    
T  34819845 aaagaaatttgatcttga 34819828  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 274 - 338
Target Start/End: Original strand, 28958522 - 28958586
Alignment:
Q  274 aaaaaatggtctttttaatttgtgcccttggggcacaaaataagaaactaaataaagaaatttaa 338  Q
    |||||| ||| || |||| ||||||||| || |||||| ||||||||||||||||||||||||||    
T  28958522 aaaaaaaggtgttgttaacttgtgccctaggagcacaagataagaaactaaataaagaaatttaa 28958586  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 338
Target Start/End: Complemental strand, 21758423 - 21758366
Alignment:
Q  281 ggtctttttaatttgtgcccttggggcacaaaataagaaactaaataaagaaatttaa 338  Q
    |||||| |||| |||||||||  || ||||| |||||||| |||||||||||||||||    
T  21758423 ggtcttgttaacttgtgccctaaggacacaagataagaaattaaataaagaaatttaa 21758366  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 343
Target Start/End: Complemental strand, 50303115 - 50303066
Alignment:
Q  294 tgtgcccttggggcacaaaataagaaactaaataaagaaatttaatcttg 343  Q
    |||||||||  ||||||| ||||||||| |||||||||||||||| ||||    
T  50303115 tgtgcccttatggcacaatataagaaaccaaataaagaaatttaaccttg 50303066  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 338
Target Start/End: Original strand, 55406849 - 55406897
Alignment:
Q  290 aatttgtgcccttggggcacaaaataagaaactaaataaagaaatttaa 338  Q
    ||||||||||| | || ||||| ||||||||||||||||| ||||||||    
T  55406849 aatttgtgcccctaggacacaagataagaaactaaataaaaaaatttaa 55406897  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 281 - 338
Target Start/End: Complemental strand, 14149624 - 14149567
Alignment:
Q  281 ggtctttttaatttgtgcccttggggcacaaaataagaaactaaataaagaaatttaa 338  Q
    |||||| |||| |||||||||| |||||||| ||||||||||||||||||||||||||    
T  14149624 ggtcttgttaacttgtgcccttagggcacaagataagaaactaaataaagaaatttaa 14149567  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 281 - 338
Target Start/End: Original strand, 21008146 - 21008203
Alignment:
Q  281 ggtctttttaatttgtgcccttggggcacaaaataagaaactaaataaagaaatttaa 338  Q
    |||||| |||| |||||||||| |||||||| |||||||||||||||||||| |||||    
T  21008146 ggtcttgttaacttgtgcccttagggcacaagataagaaactaaataaagaattttaa 21008203  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 338
Target Start/End: Original strand, 1607326 - 1607376
Alignment:
Q  288 ttaatttgtgcccttggggcacaaaataagaaactaaataaagaaatttaa 338  Q
    |||| |||||||||| |||||||| ||||||||||||||  ||||||||||    
T  1607326 ttaacttgtgcccttagggcacaatataagaaactaaatgtagaaatttaa 1607376  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 343
Target Start/End: Original strand, 36438335 - 36438397
Alignment:
Q  281 ggtctttttaatttgtgcccttggggcacaaaataagaaactaaataaagaaatttaatcttg 343  Q
    |||||| |||| |||||||||  |||||||| ||||||||||||||  ||||| |||||||||    
T  36438335 ggtcttgttaacttgtgccctaagggcacaagataagaaactaaatgtagaaacttaatcttg 36438397  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 343
Target Start/End: Complemental strand, 47950132 - 47950082
Alignment:
Q  293 ttgtgcccttggggcacaaaataagaaactaaataaagaaatttaatcttg 343  Q
    |||||||||  |||||||| ||||||||||||||  |||||||||||||||    
T  47950132 ttgtgccctaagggcacaagataagaaactaaatgtagaaatttaatcttg 47950082  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 338
Target Start/End: Original strand, 47449137 - 47449193
Alignment:
Q  282 gtctttttaatttgtgcccttggggcacaaaataagaaactaaataaagaaatttaa 338  Q
    ||||| |||| |||||||||  ||||| || | ||||||||||||||||||||||||    
T  47449137 gtcttgttaacttgtgccctaagggcataagaaaagaaactaaataaagaaatttaa 47449193  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 281 - 338
Target Start/End: Original strand, 36783191 - 36783250
Alignment:
Q  281 ggtctttttaatttgtgccctt--ggggcacaaaataagaaactaaataaagaaatttaa 338  Q
    |||||| |||||||||||||||  ||||||||| ||||||||||||||||||||||||||    
T  36783191 ggtcttgttaatttgtgcccttagggggcacaagataagaaactaaataaagaaatttaa 36783250  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 338
Target Start/End: Original strand, 2457897 - 2457931
Alignment:
Q  304 gggcacaaaataagaaactaaataaagaaatttaa 338  Q
    |||||||| ||||||||||||||||||||||||||    
T  2457897 gggcacaagataagaaactaaataaagaaatttaa 2457931  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 335
Target Start/End: Original strand, 23031686 - 23031746
Alignment:
Q  274 aaaaaatggtctttttaatttgtgcccttggggcacaaaataagaaactaaataaagaaatt 335  Q
    ||||||||||||| |||| ||||||| |  | |||||| |||||||||||||||||||||||    
T  23031686 aaaaaatggtcttgttaacttgtgcc-taagtgcacaagataagaaactaaataaagaaatt 23031746  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 282 - 338
Target Start/End: Original strand, 33440792 - 33440848
Alignment:
Q  282 gtctttttaatttgtgcccttggggcacaaaataagaaactaaataaagaaatttaa 338  Q
    ||||| |||| |||||||||| |||||||| |||||||| |||||||||||||||||    
T  33440792 gtcttgttaacttgtgcccttagggcacaatataagaaaataaataaagaaatttaa 33440848  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 281 - 343
Target Start/End: Original strand, 43592653 - 43592715
Alignment:
Q  281 ggtctttttaatttgtgcccttggggcacaaaataagaaactaaataaagaaatttaatcttg 343  Q
    |||||| |||| |||||||||  |||||||| ||||||||||||||||||||| |||| ||||    
T  43592653 ggtcttgttaacttgtgccctaagggcacaagataagaaactaaataaagaaagttaaccttg 43592715  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 338
Target Start/End: Complemental strand, 44722637 - 44722605
Alignment:
Q  306 gcacaaaataagaaactaaataaagaaatttaa 338  Q
    |||||||||||||||||||||||||||||||||    
T  44722637 gcacaaaataagaaactaaataaagaaatttaa 44722605  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 138
Target Start/End: Complemental strand, 35567141 - 35567090
Alignment:
Q  87 ttgtattgaagttttgctgtaatggaataaatcaaagttgttaagaaagaaa 138  Q
    ||||| ||||||| | |||||||||||||||||  |||||||||||||||||    
T  35567141 ttgtagtgaagttattctgtaatggaataaatctgagttgttaagaaagaaa 35567090  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 281 - 336
Target Start/End: Complemental strand, 35813944 - 35813889
Alignment:
Q  281 ggtctttttaatttgtgcccttggggcacaaaataagaaactaaataaagaaattt 336  Q
    |||||| |||| |||||||||  ||||| || ||||||||||||||||||||||||    
T  35813944 ggtcttgttaacttgtgccctaagggcaaaagataagaaactaaataaagaaattt 35813889  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 338
Target Start/End: Original strand, 32839060 - 32839094
Alignment:
Q  304 gggcacaaaataagaaactaaataaagaaatttaa 338  Q
    |||||||| ||||||||||||||||||||||||||    
T  32839060 gggcacaagataagaaactaaataaagaaatttaa 32839094  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 337
Target Start/End: Original strand, 12892559 - 12892615
Alignment:
Q  281 ggtctttttaatttgtgcccttggggcacaaaataagaaactaaataaagaaattta 337  Q
    |||||| ||||||||||||||  | |||||| |||||||||||||||||||| ||||    
T  12892559 ggtcttgttaatttgtgccctaagagcacaagataagaaactaaataaagaatttta 12892615  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 344
Target Start/End: Original strand, 7753630 - 7753670
Alignment:
Q  304 gggcacaaaataagaaactaaataaagaaatttaatcttga 344  Q
    |||||||| ||||||||||||||||| ||||||||||||||    
T  7753630 gggcacaatataagaaactaaataaaaaaatttaatcttga 7753670  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 338
Target Start/End: Original strand, 32604487 - 32604519
Alignment:
Q  306 gcacaaaataagaaactaaataaagaaatttaa 338  Q
    |||||| ||||||||||||||||||||||||||    
T  32604487 gcacaagataagaaactaaataaagaaatttaa 32604519  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 335
Target Start/End: Original strand, 29431779 - 29431827
Alignment:
Q  287 tttaatttgtgcccttggggcacaaaataagaaactaaataaagaaatt 335  Q
    ||||| |||||||||  |||||||| |||||||||||||||||||||||    
T  29431779 tttaacttgtgccctaagggcacaagataagaaactaaataaagaaatt 29431827  T

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