View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4350-Insertion-1 (Length: 813)
Name: NF4350-Insertion-1
Description: NF4350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4350-Insertion-1 |
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Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-153; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 197 - 475
Target Start/End: Complemental strand, 41350598 - 41350320
Alignment:
| Q |
197 |
cagccacatgactagattgagcagaagaaagaatagctttaaggctagaaaaatggccataataagcagcatagtgtaaacaggttcttccattaaccgt |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41350598 |
cagccacatgactagattgagcagaagaaagaatagctttaaggcaagaaaaatggccataataagcagcatagtgtaaacaggttcttccattaaccgt |
41350499 |
T |
|
| Q |
297 |
atcaaacatcaaaacctgaaaattttcataatttccacaaatcaattttccaaattcatctatggattaacaaatgaaactaacaatgaaattttccaaa |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41350498 |
atcaaacatcaaaacctgaaaattttcataatttccacaaatcaattttccaaattcatctatggattaacaaatgaaactaacaatgaaattttccaaa |
41350399 |
T |
|
| Q |
397 |
ttacattagcaccagcttcaagtagcttctccacacatgcaatccttccatgcattgcagccaacataagaggagtctg |
475 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41350398 |
ttacattagcaccagcttcaagtagcttctccacacatgcaatccttccatgcattgcagccaacataagaggagtctg |
41350320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 8 - 132
Target Start/End: Complemental strand, 41350793 - 41350669
Alignment:
| Q |
8 |
aggccgtctttgtcgagatgccaaatgcaacggcgtcgcaccctttccatctctaacattcacaaaccgaacaaatcccctacaaccaattcaagaacat |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41350793 |
aggccgtctttgtcgagatgccaaatgcaacggcgtcgcaccctttccatctctaacattcacaaaccgaacaaatcccctacaaccaattcaagaacat |
41350694 |
T |
|
| Q |
108 |
ttaaaaaaccataacaacatagcat |
132 |
Q |
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| T |
41350693 |
ttaaaaaaccataacaacatagcat |
41350669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 719 - 813
Target Start/End: Complemental strand, 41350077 - 41349983
Alignment:
| Q |
719 |
gaattcacctcgatctggccattagcagcagcaatatgaagaggtgaaaaacgatcaaagagagttttttgatggaaaagagaagggtcttgttg |
813 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41350077 |
gaattcacctcgatctggccattagcagcagcaatatgaagaggtgaaaaacgatcaaagagagttttttgatggaaaagagaagggtcttgttg |
41349983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 561 - 646
Target Start/End: Complemental strand, 41350230 - 41350145
Alignment:
| Q |
561 |
taagcaacataaccaaccattacctgtttttgtcgatttaaaacatctggattaacagatccatgtaaaagcctagacagaatctg |
646 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41350230 |
taagcaacataatcaaccattacctgtttttgtcgatttaaaacatctggattaacagatccatgtaaaagcctagacagaatctg |
41350145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 398 - 475
Target Start/End: Complemental strand, 23712659 - 23712582
Alignment:
| Q |
398 |
tacattagcaccagcttcaagtagcttctccacacatgcaatccttccatgcattgcagccaacataagaggagtctg |
475 |
Q |
| |
|
||||||||||||||||||||| | ||| |||||||| ||||| ||||||||||||| ||||||||||| || ||||| |
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|
| T |
23712659 |
tacattagcaccagcttcaagcaacttttccacacaatcaatctttccatgcattgctgccaacataagtggggtctg |
23712582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 197 - 322
Target Start/End: Complemental strand, 23712865 - 23712740
Alignment:
| Q |
197 |
cagccacatgactagattgagcagaagaaagaatagctttaaggctagaaaaatggccataataagcagcatagtgtaaacaggttcttccattaaccgt |
296 |
Q |
| |
|
|||||||| |||||||| |||||| |||||| || || ||||||| |||| |||| ||||| ||||||||||| || || || |||||||||| | | |
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| T |
23712865 |
cagccacaggactagatcgagcagcagaaagtattgccttaaggcaagaagaatgaccatagtaagcagcataatgcaagcaagttcttccatgacacac |
23712766 |
T |
|
| Q |
297 |
atcaaacatcaaaacctgaaaatttt |
322 |
Q |
| |
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||||||||| ||||||||| |||||| |
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|
| T |
23712765 |
atcaaacattaaaacctgataatttt |
23712740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 23713064 - 23712996
Alignment:
| Q |
8 |
aggccgtctttgtcgagatgccaaatgcaacggcgtcgcaccctttccatctctaacattcacaaaccg |
76 |
Q |
| |
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|||||||||||| |||| ||||||||||||||| || ||||| | || ||||||| |||||||||||| |
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| T |
23713064 |
aggccgtctttgacgagctgccaaatgcaacggtgtagcacctctaccgtctctaatattcacaaaccg |
23712996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 249 - 286
Target Start/End: Original strand, 7347134 - 7347171
Alignment:
| Q |
249 |
atggccataataagcagcatagtgtaaacaggttcttc |
286 |
Q |
| |
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|||||||||||||||||||||||| || |||||||||| |
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|
| T |
7347134 |
atggccataataagcagcatagtgcaagcaggttcttc |
7347171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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