View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4350-Insertion-2 (Length: 677)
Name: NF4350-Insertion-2
Description: NF4350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4350-Insertion-2 |
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Alignment Details
Target: chr2 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 8 - 525
Target Start/End: Original strand, 3840146 - 3840654
Alignment:
| Q |
8 |
caaatgttaactggttcctcggagacagcaaaacaagcttcaacttcaacaaaaccaaaccataaccataaccataacattcctccnnnnnnncaacaag |
107 |
Q |
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| T |
3840146 |
caaatgttaactggttcctcggagacagcaaaacaagcttcaacttcaacaaaagcaaaccataaccataac------attcctccaaaaaaacaacaag |
3840239 |
T |
|
| Q |
108 |
gtttcaaactctatgaaagaagaaactcatttcacaaaaaccttaacattaaccctttattaccacccattttccccaactcaactttctcacctcgtaa |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
3840240 |
gtttcaaactctatgaaagaagaaactcatttcacaaaaaccttaacattaaccctttattaccacccattttctcaaactcaactttctcacctcgtaa |
3840339 |
T |
|
| Q |
208 |
caaacaagagatcttgtcacctagtatcctagattttccttctcttgttcttagcccggttacaccacttatacccgacccatttaaccgatccggnnnn |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3840340 |
caaacaagagatcttgtcacctagtatcctagattttccttctcttgttcttagcccggttacaccacttatacccgacccatttaaccgatccgg---t |
3840436 |
T |
|
| Q |
308 |
nnnnnnnnnnnnnnnnnngctgctagaaatgtttcttctttggattctttagctgaagataaagctataagagaaaagggtttctttctgcatccttctc |
407 |
Q |
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| T |
3840437 |
tcttcttcttcttcttctgctgctagaaatggttcttctttggattctttagctgaagataaagctataagagaaaagggtttctttctgcatccttctc |
3840536 |
T |
|
| Q |
408 |
ctagagctgcttcaacttctagagactctgaacctcgtttgcttcctctttttcctacttcttctcctagggcttcaggtccttcaccttcttcaaaata |
507 |
Q |
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| T |
3840537 |
ctagagctgcttcaacttctagagactctgaacctcgtttgcttcctctttttcctacttcttctcctagggcttcaggtccttcatcttcttcaaaata |
3840636 |
T |
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| Q |
508 |
ttctgcatcttgaacctt |
525 |
Q |
| |
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|||||||||||||||||| |
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| T |
3840637 |
ttctgcatcttgaacctt |
3840654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 599 - 677
Target Start/End: Original strand, 3840726 - 3840804
Alignment:
| Q |
599 |
ctaatgaaatggattgatttgtattagtgttttattttatggaagacaattcaataatcttttgtcgagtcggatcaag |
677 |
Q |
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| T |
3840726 |
ctaatgaaatggattgatttgtattagtgttttattttatggaagacaattcaataatcttttgtcgagtcggatcaag |
3840804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 7e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 222 - 295
Target Start/End: Complemental strand, 35302648 - 35302575
Alignment:
| Q |
222 |
tgtcacctagtatcctagattttccttctcttgttcttagcccggttacaccacttatacccgacccatttaac |
295 |
Q |
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|||| ||||||||||||||||||||| | |||||||||||||| |||||||| |||||||| ||||| |||||| |
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| T |
35302648 |
tgtctcctagtatcctagattttcctgcgcttgttcttagccctgttacacctcttataccggacccttttaac |
35302575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 107 - 135
Target Start/End: Complemental strand, 35302769 - 35302741
Alignment:
| Q |
107 |
ggtttcaaactctatgaaagaagaaactc |
135 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
35302769 |
ggtttcaaactctatgaaagaagaaactc |
35302741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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