View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4350-Insertion-3 (Length: 626)

Name: NF4350-Insertion-3
Description: NF4350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4350-Insertion-3
NF4350-Insertion-3
[»] chr7 (9 HSPs)
chr7 (8-616)||(33032735-33033343)
chr7 (8-364)||(33120295-33120641)
chr7 (212-343)||(33017467-33017598)
chr7 (8-72)||(34906309-34906373)
chr7 (8-72)||(34913952-34914016)
chr7 (484-585)||(33033676-33033777)
chr7 (8-69)||(1470658-1470719)
chr7 (21-77)||(35702421-35702477)
chr7 (471-533)||(33120932-33120994)
[»] chr6 (2 HSPs)
chr6 (18-485)||(22366276-22366743)
chr6 (8-66)||(26384421-26384479)
[»] chr4 (2 HSPs)
chr4 (8-101)||(41108172-41108265)
chr4 (10-63)||(7600923-7600976)
[»] chr5 (6 HSPs)
chr5 (8-70)||(10101094-10101156)
chr5 (8-69)||(21036244-21036305)
chr5 (12-70)||(9678699-9678757)
chr5 (8-70)||(10214390-10214452)
chr5 (8-70)||(10104897-10104959)
chr5 (8-69)||(20982839-20982899)
[»] chr3 (1 HSPs)
chr3 (9-69)||(5130615-5130675)
[»] chr8 (1 HSPs)
chr8 (9-69)||(1086910-1086970)


Alignment Details
Target: chr7 (Bit Score: 597; Significance: 0; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 597; E-Value: 0
Query Start/End: Original strand, 8 - 616
Target Start/End: Original strand, 33032735 - 33033343
Alignment:
Q  8 cttagaaatcaaggacacagtagtacgatcctatagaacagatcctgttcaagtaaggtcgtgaccaatgctctccgcgtgctgtatataaacatttagc 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  33032735 cttagaaatcaaggacacagtagtacgatcctatagaacagatcctgttcaagtaaggtcgtgaccaaagctctccgcgtgctgtatataaacatttagc 33032834  T
Q  108 ataatcctgaaccaaacgatgtgggactatatttcatgtttgtagtattagtttaaaaaattaggtttctgtcttttgttgtcacgccttgttactatca 207  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  33032835 ataatcctgaaccaaaagatgtgggactatatttcatgtttgtagtattagtttaaaaaatgaggtttctgtcttttgttgtcacgccttgttactatca 33032934  T
Q  208 atgctcatcaatttagtataaagtttgatgaatttttctatactcaatgttgctatactatatctgtttctgaaattcttaaaatattttagaactgact 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33032935 atgctcatcaatttagtataaagtttgatgaatttttctatactcaatgttgctatactatatctgtttctgaaattcttaaaatattttagaactgact 33033034  T
Q  308 ccaaagtgtgtggtaaaatggtgctattagtgttagcttctgtaaacttggaaaactagagtataaaatagaaatttcaagcttgtttttctagctctaa 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33033035 ccaaagtgtgtggtaaaatggtgctattagtgttagcttctgtaaacttggaaaactagagtataaaatagaaatttcaagcttgtttttctagctctaa 33033134  T
Q  408 caataagttttatctcatttcaaagcttaatggttcaagagaaagtgcattctaagcaatgcaatgaaataaaaagaatctgcaaacattatgtaaccta 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33033135 caataagttttatctcatttcaaagcttaatggttcaagagaaagtgcattctaagcaatgcaatgaaataaaaagaatctgcaaacattatgtaaccta 33033234  T
Q  508 ttttgttgatagttttgtactataggtgatgaacttaggttcctgtctccctagaaaccgatcctgttcaagcaaggttcctgtctccctagtatgtcac 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33033235 ttttgttgatagttttgtactataggtgatgaacttaggttcctgtctccctagaaaccgatcctgttcaagcaaggttcctgtctccctagtatgtcac 33033334  T
Q  608 gcaagctaa 616  Q
    |||||||||    
T  33033335 gcaagctaa 33033343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 8 - 364
Target Start/End: Original strand, 33120295 - 33120641
Alignment:
Q  8 cttagaaatcaaggacacagtagtacgatcctatagaacagatcctgttcaagtaaggtcgtgaccaatgctctccgcgtgctgtatataaacatttagc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||   ||||||||||||||||     
T  33120295 cttagaaatcaaggacacagtagtacgatcctatagaacagatcctgttcaagtaaggtcgtgaccgttgctctccgcgtagagtatataaacatttagt 33120394  T
Q  108 ataatcctgaaccaaacgatgtgggactatatttcatgtttgtagtattagtttaaaaaattaggtttctgtcttttgttgtcacgccttgttactatca 207  Q
    |||| ||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||          |||||||||||     
T  33120395 ataagcctaaaccaaacgatgtgggactttatttcatgtttgtagtattagtttcaaaaatgaggtttctgtcttttg----------ttgttactatct 33120484  T
Q  208 atgctcatcaatttagtataaagtttgatgaatttttctatactcaatgttgctatactatatctgtttctgaaattcttaaaatattttagaactgact 307  Q
     ||||||||||||| |  | | |||||||||||||||||||||||| |||||||||||||||||||||| ||||| |  || ||||| ||||||||||||    
T  33120485 ctgctcatcaatttggcgtgacgtttgatgaatttttctatactcattgttgctatactatatctgtttttgaaaattgtagaatatattagaactgact 33120584  T
Q  308 ccaaagtgtgtggtaaaatggtgctattagtgttagcttctgtaaacttggaaaact 364  Q
    |||||||||||||||||||| ||| |||||||| ||||||| |||||||| ||||||    
T  33120585 ccaaagtgtgtggtaaaatgatgcaattagtgtaagcttctttaaacttgaaaaact 33120641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 212 - 343
Target Start/End: Complemental strand, 33017598 - 33017467
Alignment:
Q  212 tcatcaatttagtataaagtttgatgaatttttctatactcaatgttgctatactatatctgtttctgaaattcttaaaatattttagaactgactccaa 311  Q
    |||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| | ||||||||    
T  33017598 tcatcaatttagcataatgcttgatgaatttttctatactcaatgttgctatactatatctatttctgaaattcttaaaatcttttagagccgactccaa 33017499  T
Q  312 agtgtgtggtaaaatggtgctattagtgttag 343  Q
    | |||||||||||||| ||| |||||||||||    
T  33017498 aatgtgtggtaaaatgatgcaattagtgttag 33017467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 34906373 - 34906309
Alignment:
Q  8 cttagaaatcaaggacacagtagtacgatcctatagaacagatcctgttcaagtaaggtcgtgac 72  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34906373 cttagaaatcaaggacacagtagtacgatcctatagaacagatcctgttcaagtaaggtcgtgac 34906309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 34913952 - 34914016
Alignment:
Q  8 cttagaaatcaaggacacagtagtacgatcctatagaacagatcctgttcaagtaaggtcgtgac 72  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34913952 cttagaaatcaaggacacagtagtacgatcctatagaacagatcctgttcaagtaaggtcgtgac 34914016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 484 - 585
Target Start/End: Original strand, 33033676 - 33033777
Alignment:
Q  484 aatctgcaaacattatgtaacctattttgttgatagttttgtactataggtgatgaacttaggttcctgtctccctagaaaccgatcctgttcaagcaag 583  Q
    ||||||||||||||||||  | |||||| |||||||||||||| ||||||||||||||||||| ||| ||||||||||||||| ||| | |||||| |||    
T  33033676 aatctgcaaacattatgtttcttattttattgatagttttgtattataggtgatgaacttaggctccagtctccctagaaaccaatcatattcaagtaag 33033775  T
Q  584 gt 585  Q
    ||    
T  33033776 gt 33033777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 1470658 - 1470719
Alignment:
Q  8 cttagaaatcaaggacacagtagtacgatcctatagaacagatcctgttcaagtaaggtcgt 69  Q
    |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  1470658 cttagaaatcaaggacacagtagtacgatcctatagaatagatcatgttcaagtaaggtcgt 1470719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 35702477 - 35702421
Alignment:
Q  21 gacacagtagtacgatcctatagaacagatcctgttcaagtaaggtcgtgaccaatg 77  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  35702477 gacacagtagtaccatcctatagaacagatcctgttcaagtaaggtcgtgaccaatg 35702421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 471 - 533
Target Start/End: Original strand, 33120932 - 33120994
Alignment:
Q  471 atgaaataaaaagaatctgcaaacattat-gtaacctattttgttgatagttttgtactatagg 533  Q
    |||||||||||| |||||||||||||||| |||| ||||||| |||||| | ||||||||||||    
T  33120932 atgaaataaaaa-aatctgcaaacattattgtaatctattttattgatattattgtactatagg 33120994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 424; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 18 - 485
Target Start/End: Complemental strand, 22366743 - 22366276
Alignment:
Q  18 aaggacacagtagtacgatcctatagaacagatcctgttcaagtaaggtcgtgaccaatgctctccgcgtgctgtatataaacatttagcataatcctga 117  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||| | || | ||||| |||||||||||||||||||||||| ||||||    
T  22366743 aaggacacagtagtacgatcctatagaacagatcctgttcaaataaggtcgtgactattgttgtccgcatgctgtatataaacatttagcatattcctga 22366644  T
Q  118 accaaacgatgtgggactatatttcatgtttgtagtattagtttaaaaaattaggtttctgtcttttgttgtcacgccttgttactatcaatgctcatca 217  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  22366643 accaaacgatgtgggactatatttcatgtttgtagtattagtttcaaaaatgaggtttctgtcttttgttgtcacgccttgttactatcaatgctcatca 22366544  T
Q  218 atttagtataaagtttgatgaatttttctatactcaatgttgctatactatatctgtttctgaaattcttaaaatattttagaactgactccaaagtgtg 317  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22366543 atttagcataaagtttgatgaatttttctatactcaatgttgctatactatatctgtttctgaaattcttaaaatattttagaactgactccaaagtgtg 22366444  T
Q  318 tggtaaaatggtgctattagtgttagcttctgtaaacttggaaaactagagtataaaatagaaatttcaagcttgtttttctagctctaacaataagttt 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22366443 tggtaaaatggtgctattagtgttagcttctgtaaacttggaaaactagagtataaaatagaaatttcaagcttgtttttctagctctaacaataagttt 22366344  T
Q  418 tatctcatttcaaagcttaatggttcaagagaaagtgcattctaagcaatgcaatgaaataaaaagaa 485  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22366343 tatctcatttcagagcttaatggttcaagagaaagtgcattctaagcaatgcaatgaaataaaaagaa 22366276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 26384479 - 26384421
Alignment:
Q  8 cttagaaatcaaggacacagtagtacgatcctatagaacagatcctgttcaagtaaggt 66  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26384479 cttagaaatcaaggacacagtagtacgatcctatagaacagatcctgttcaagtaaggt 26384421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 7e-29; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 8 - 101
Target Start/End: Original strand, 41108172 - 41108265
Alignment:
Q  8 cttagaaatcaaggacacagtagtacgatcctatagaacagatcctgttcaagtaaggtcgtgaccaatgctctccgcgtgctgtatataaaca 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||  ||||||   ||||||||||    
T  41108172 cttagaaatcaaggacacagtagtacgatcctatagaacagatcctgttcaagtaaggtcgtgactattgctccacgcgtgtgttatataaaca 41108265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 7600976 - 7600923
Alignment:
Q  10 tagaaatcaaggacacagtagtacgatcctatagaacagatcctgttcaagtaa 63  Q
    ||||||||||||||||| | |||| | ||||||||||| ||||||| |||||||    
T  7600976 tagaaatcaaggacacaattgtacaagcctatagaacaaatcctgtccaagtaa 7600923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 5e-27; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 10101094 - 10101156
Alignment:
Q  8 cttagaaatcaaggacacagtagtacgatcctatagaacagatcctgttcaagtaaggtcgtg 70  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10101094 cttagaaatcaaggacacagtagtacgatcctatagaacagatcctgttcaagtaaggtcgtg 10101156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 21036244 - 21036305
Alignment:
Q  8 cttagaaatcaaggacacagtagtacgatcctatagaacagatcctgttcaagtaaggtcgt 69  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21036244 cttagaaatcaaggacacagtagtacgatcctatagaacagatcctgttcaagtaaggtcgt 21036305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 9678757 - 9678699
Alignment:
Q  12 gaaatcaaggacacagtagtacgatcctatagaacagatcctgttcaagtaaggtcgtg 70  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9678757 gaaatcaaggacacagtagtacgatcctatagaacagatcctgttcaagtaaggtcgtg 9678699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 10214452 - 10214390
Alignment:
Q  8 cttagaaatcaaggacacagtagtacgatcctatagaacagatcctgttcaagtaaggtcgtg 70  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  10214452 cttagaaatcaaggacacagtagtacaatcctatagaacagatcctgttcaagtaaggtcgtg 10214390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 10104897 - 10104959
Alignment:
Q  8 cttagaaatcaaggacacagtagtacgatcctatagaacagatcctgttcaagtaaggtcgtg 70  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  10104897 cttagaaatcaaggacacagtagtataatcctatagaacagatcctgttcaagtaaggtcgtg 10104959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 20982839 - 20982899
Alignment:
Q  8 cttagaaatcaaggacacagtagtacgatcctatagaacagatcctgttcaagtaaggtcgt 69  Q
    ||||||||||||||| ||| ||||||||||||||||| |||||||||||| |||||||||||    
T  20982839 cttagaaatcaaggatacaatagtacgatcctatagatcagatcctgttc-agtaaggtcgt 20982899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 5130675 - 5130615
Alignment:
Q  9 ttagaaatcaaggacacagtagtacgatcctatagaacagatcctgttcaagtaaggtcgt 69  Q
    ||||||||||||||||||||| |||||||||||| || ||||| |||||||||||||||||    
T  5130675 ttagaaatcaaggacacagtaatacgatcctataaaagagatcttgttcaagtaaggtcgt 5130615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 1086910 - 1086970
Alignment:
Q  9 ttagaaatcaaggacacagtagtacgatcctatagaacagatcctgttcaagtaaggtcgt 69  Q
    |||||||||||||||||| |||||||||| |||| || ||||| |||||||||||||||||    
T  1086910 ttagaaatcaaggacacaatagtacgatcttataaaatagatcttgttcaagtaaggtcgt 1086970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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