View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4350-Insertion-4 (Length: 522)
Name: NF4350-Insertion-4
Description: NF4350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4350-Insertion-4 |
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Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 8 - 360
Target Start/End: Complemental strand, 3597023 - 3596668
Alignment:
| Q |
8 |
tgtctgtgtcata-ccggtgtcgtgcatctgtatattaaaatgcatttcaacaacatagaagnnnnnnnttctgaaaatctctctaatcaattaacctta |
106 |
Q |
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| T |
3597023 |
tgtctgtgtcatatccggtgtcgtgcatctgtatattaaaatgcatttcaacaacatagaagaaaaaaattctgaaaatctctctaatcaattaacctta |
3596924 |
T |
|
| Q |
107 |
gcatcgtaatcatccataatctcaattcaatcatcgtcacaattgcattataatcatataacgtaacatgcaatagaattcaaacgcaagaaaaacagag |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3596923 |
gcatcgtaatcatccataatctcaattcaatcatcgtcacaattgcattataatcatataacgtaacatgcaatagaattcaaacgcaagaaaaacagag |
3596824 |
T |
|
| Q |
207 |
aaccttcatcgtaattcataagcattgaatcaacgattatannnnnnnaaataaag--aaaattacgtattatgaaatcgctaacctcaacgaataaatt |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
3596823 |
aaccttcatcgtaattcataagcattgaatcaacgattatatttttttaaataaagaaaaaattacgtattatgaaatcgctaacctcaacgaataaatt |
3596724 |
T |
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| Q |
305 |
tagcggcgaacccaaagcgcaaagcggtggccggaaatattgccgccggtgaagtt |
360 |
Q |
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| T |
3596723 |
tagcggcgaatccaaagcgcaaagcggtggccggagatattgccgccggtgaagtt |
3596668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 425 - 522
Target Start/End: Complemental strand, 3596605 - 3596508
Alignment:
| Q |
425 |
aatgggtttatatatgaaatgtgttttctttgcaccgccaatgatttattacaacgtggtttctgagtgtggatggtgcaacttttggatgctattga |
522 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3596605 |
aatgggtttatatatgaaatgtgttttctttgcaccgccaatgatttattacaacgtggtttctgagtgtggatggtgcaacttttggatgctattga |
3596508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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